Smco4 (single-pass membrane protein with coiled-coil domains 4) - Rat Genome Database

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Gene: Smco4 (single-pass membrane protein with coiled-coil domains 4) Heterocephalus glaber
Analyze
Symbol: Smco4
Name: single-pass membrane protein with coiled-coil domains 4
RGD ID: 18916299
Description: ASSOCIATED WITH intellectual disability (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: single-pass membrane and coiled-coil domain-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473538,134,480 - 38,134,659 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473538,133,940 - 38,202,222 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Smco4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473538,134,480 - 38,134,659 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473538,133,940 - 38,202,222 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SMCO4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381193,478,472 - 93,553,979 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1193,478,472 - 93,543,391 (-)EnsemblGRCh38hg38GRCh38
GRCh371193,211,638 - 93,276,557 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361192,851,286 - 92,925,437 (-)NCBINCBI36Build 36hg18NCBI36
Celera1190,503,166 - 90,568,014 (-)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1189,289,224 - 89,353,972 (-)NCBIHuRef
CHM1_11193,094,639 - 93,159,538 (-)NCBICHM1_1
T2T-CHM13v2.01193,394,933 - 93,470,364 (-)NCBIT2T-CHM13v2.0
Smco4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39915,379,736 - 15,456,556 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl915,404,728 - 15,456,556 (+)EnsemblGRCm39 Ensembl
GRCm38915,468,440 - 15,545,260 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl915,493,432 - 15,545,260 (+)EnsemblGRCm38mm10GRCm38
MGSCv37915,309,662 - 15,349,704 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36915,255,611 - 15,295,653 (+)NCBIMGSCv36mm8
Celera912,784,367 - 12,824,350 (+)NCBICelera
Cytogenetic Map9A2NCBI
cM Map94.95NCBI
Smco4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,594,633 - 20,646,916 (+)NCBIGRCr8
mRatBN7.2812,313,235 - 12,365,534 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl812,313,328 - 12,365,529 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx816,332,747 - 16,352,331 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0814,630,498 - 14,650,082 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0812,608,185 - 12,627,766 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0814,026,637 - 14,079,977 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl814,060,394 - 14,079,972 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0814,139,544 - 14,159,122 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4812,328,341 - 12,347,919 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1812,328,421 - 12,347,919 (+)NCBI
Celera813,812,588 - 13,832,166 (+)NCBICelera
Cytogenetic Map8q12NCBI
Smco4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955414976,105 - 1,029,825 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955414976,105 - 1,029,825 (+)NCBIChiLan1.0ChiLan1.0
SMCO4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2994,102,049 - 94,402,660 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11195,431,294 - 95,496,498 (-)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl1191,987,559 - 91,987,738 (-)Ensemblpanpan1.1panPan2
SMCO4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1217,168,999 - 7,228,974 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl217,228,279 - 7,228,458 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha217,180,971 - 7,243,697 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0217,346,220 - 7,408,971 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1217,132,399 - 7,195,142 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0217,196,729 - 7,259,448 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0217,245,950 - 7,308,694 (+)NCBIUU_Cfam_GSD_1.0
Smco4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494778,599,527 - 78,667,297 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366741,291,227 - 1,291,406 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SMCO4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11661,756,420 - 61,757,094 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607732,518,331 - 32,518,798 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000029158   ⟹   ENSHGLP00000028624
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473538,134,480 - 38,134,659 (-)Ensembl
RefSeq Acc Id: XM_021252574   ⟹   XP_021108233
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473538,133,940 - 38,202,184 (-)NCBI
RefSeq Acc Id: XM_021252578   ⟹   XP_021108237
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473538,133,940 - 38,202,176 (-)NCBI
RefSeq Acc Id: XM_021252580   ⟹   XP_021108239
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473538,133,940 - 38,202,176 (-)NCBI
RefSeq Acc Id: XM_021252582   ⟹   XP_021108241
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473538,133,940 - 38,202,176 (-)NCBI
RefSeq Acc Id: XM_021252583   ⟹   XP_021108242
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473538,133,940 - 38,142,789 (-)NCBI
RefSeq Acc Id: XM_021252589   ⟹   XP_021108248
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473538,133,940 - 38,202,222 (-)NCBI
RefSeq Acc Id: XP_021108248   ⟸   XM_021252589
- UniProtKB: A0AAX6SH67 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021108233   ⟸   XM_021252574
- UniProtKB: A0AAX6SH67 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021108237   ⟸   XM_021252578
- UniProtKB: A0AAX6SH67 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021108239   ⟸   XM_021252580
- UniProtKB: A0AAX6SH67 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021108241   ⟸   XM_021252582
- UniProtKB: A0AAX6SH67 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021108242   ⟸   XM_021252583
- UniProtKB: A0AAX6SH67 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000028624   ⟸   ENSHGLT00000029158


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000020948 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000029158 ENTREZGENE
NCBI Gene Smco4 ENTREZGENE
UniProt A0AAX6SH67 ENTREZGENE, UniProtKB/TrEMBL