S100a14 (S100 calcium binding protein A14) - Rat Genome Database

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Gene: S100a14 (S100 calcium binding protein A14) Heterocephalus glaber
Analyze
Symbol: S100a14
Name: S100 calcium binding protein A14
RGD ID: 18916294
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent protein binding (inferred); chemokine receptor binding (inferred); INVOLVED IN defense response to bacterium (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN extracellular space (inferred); perinuclear region of cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein S100-A14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,529,026 - 3,532,182 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,529,813 - 3,531,314 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
S100a14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,529,026 - 3,532,182 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,529,813 - 3,531,314 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
S100A14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,614,255 - 153,616,325 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,614,255 - 153,616,986 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,586,731 - 153,588,801 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,853,355 - 151,855,414 (-)NCBINCBI36Build 36hg18NCBI36
Build 341150,399,806 - 150,401,863NCBI
Cytogenetic Map1q21.3NCBI
HuRef1124,950,177 - 124,952,316 (-)NCBIHuRef
CHM1_11154,982,704 - 154,984,781 (-)NCBICHM1_1
T2T-CHM13v2.01152,751,515 - 152,754,472 (-)NCBIT2T-CHM13v2.0
S100a14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,434,156 - 90,436,144 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,434,163 - 90,436,144 (+)EnsemblGRCm39 Ensembl
GRCm38390,526,849 - 90,528,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,526,856 - 90,528,837 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,330,771 - 90,332,759 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,612,797 - 90,614,760 (+)NCBIMGSCv36mm8
Celera390,565,393 - 90,567,381 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.25NCBI
S100a14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,305,976 - 178,308,004 (+)NCBIGRCr8
mRatBN7.22176,008,395 - 176,010,423 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2176,008,395 - 176,010,423 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,148,439 - 183,150,466 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,170,702 - 181,172,729 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,771,055 - 175,773,081 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,913,433 - 189,919,947 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02209,343,348 - 209,347,503 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,800,173 - 182,809,448 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2169,941,896 - 169,945,463 (+)NCBICelera
Cytogenetic Map2q34NCBI
S100a14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545261,323 - 264,374 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545261,483 - 263,689 (-)NCBIChiLan1.0ChiLan1.0
S100A14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,215,314 - 96,219,745 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,951,822 - 95,954,936 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,969,353 - 128,972,484 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,597,623 - 132,600,360 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,597,623 - 132,600,360 (-)Ensemblpanpan1.1panPan2
S100A14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,443,073 - 43,446,416 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,444,396 - 43,446,287 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,937,287 - 42,939,400 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,394,001 - 43,396,114 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,394,002 - 43,396,126 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,096,303 - 43,098,416 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,149,971 - 43,152,083 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,433,817 - 43,435,929 (+)NCBIUU_Cfam_GSD_1.0
S100a14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,383,931 - 24,386,005 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,414,296 - 3,416,393 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,414,315 - 3,416,335 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100A14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl496,027,639 - 96,029,869 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1496,027,746 - 96,029,878 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,969,371 - 104,971,503 (-)NCBISscrofa10.2Sscrofa10.2susScr3
S100A14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,188,016 - 10,190,973 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,188,866 - 10,190,979 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,564,102 - 9,568,184 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000012535   ⟹   ENSHGLP00000012400
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248853,529,026 - 3,532,182 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000012536   ⟹   ENSHGLP00000012401
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248853,530,322 - 3,531,220 (+)Ensembl
RefSeq Acc Id: XM_004871436   ⟹   XP_004871493
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248853,529,813 - 3,531,314 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004871493 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012400
GenBank Protein JAN96604 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004871493   ⟸   XM_004871436
- UniProtKB: A0A0P6IX10 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000012400   ⟸   ENSHGLT00000012535
Ensembl Acc Id: ENSHGLP00000012401   ⟸   ENSHGLT00000012536


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008860 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012535 ENTREZGENE
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
KEGG Report hgl:101718454 UniProtKB/TrEMBL
NCBI Gene S100a14 ENTREZGENE
PANTHER PTHR11639:SF4 UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam S_100 UniProtKB/TrEMBL
SMART S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A0P6IX10 ENTREZGENE, UniProtKB/TrEMBL