Gpa33 (glycoprotein A33) - Rat Genome Database

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Gene: Gpa33 (glycoprotein A33) Heterocephalus glaber
Analyze
Symbol: Gpa33
Name: glycoprotein A33
RGD ID: 18915077
Description: ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); Latent Tuberculosis (ortholog); parathyroid carcinoma (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell surface A33 antigen
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248265,152,114 - 5,183,403 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Gpa33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248265,152,114 - 5,183,403 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GPA33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381167,052,836 - 167,090,377 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1167,052,836 - 167,166,479 (-)EnsemblGRCh38hg38GRCh38
GRCh371167,022,073 - 167,059,614 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,288,706 - 165,326,492 (-)NCBINCBI36Build 36hg18NCBI36
Build 341163,753,739 - 163,791,526NCBI
Celera1140,127,216 - 140,164,992 (-)NCBICelera
Cytogenetic Map1q24.1NCBI
HuRef1138,268,969 - 138,306,291 (-)NCBIHuRef
CHM1_11168,443,791 - 168,482,342 (-)NCBICHM1_1
T2T-CHM13v2.01166,398,672 - 166,437,547 (-)NCBIT2T-CHM13v2.0
Gpa33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391165,957,790 - 165,994,079 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1165,957,807 - 165,994,079 (+)EnsemblGRCm39 Ensembl
GRCm381166,130,221 - 166,166,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1166,130,238 - 166,166,510 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,060,591 - 168,096,641 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361167,967,135 - 168,003,185 (+)NCBIMGSCv36mm8
Celera1168,573,855 - 168,609,931 (+)NCBICelera
Cytogenetic Map1H2.3NCBI
cM Map173.49NCBI
Gpa33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81380,914,119 - 80,947,738 (+)NCBIGRCr8
mRatBN7.21378,381,141 - 78,414,765 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1378,381,141 - 78,414,765 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1380,998,111 - 81,033,883 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01382,302,583 - 82,338,338 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01379,550,433 - 79,586,107 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01384,334,598 - 84,368,154 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1384,334,598 - 84,368,154 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01389,212,323 - 89,245,475 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41381,858,333 - 81,892,579 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11381,872,514 - 81,906,767 (+)NCBI
Celera1378,091,717 - 78,124,683 (+)NCBICelera
Cytogenetic Map13q23NCBI
Gpa33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554629,840,188 - 9,869,938 (+)NCBIChiLan1.0ChiLan1.0
GPA33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,701,392 - 82,723,572 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1182,369,779 - 82,391,975 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01142,473,352 - 142,512,364 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11146,259,431 - 146,298,105 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1146,259,431 - 146,298,105 (-)Ensemblpanpan1.1panPan2
GPA33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1731,277,223 - 31,324,264 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl731,272,250 - 31,322,647 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha730,816,076 - 30,863,107 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0731,098,671 - 31,145,755 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl731,098,463 - 31,144,582 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1730,937,142 - 30,984,160 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0730,968,972 - 31,016,032 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0731,207,479 - 31,254,540 (+)NCBIUU_Cfam_GSD_1.0
Gpa33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344101,006,407 - 101,033,696 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648118,853,301 - 18,880,391 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648118,866,637 - 18,880,391 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPA33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl483,904,915 - 83,941,563 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1483,904,651 - 83,943,238 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2491,579,032 - 91,642,186 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPA33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12561,944,882 - 61,983,695 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2561,945,340 - 61,985,078 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605563,698,214 - 63,720,635 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013065746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01082527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_013065746   ⟹   XP_012921200
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248265,152,114 - 5,183,403 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012921200 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012921200   ⟸   XM_013065746
- UniProtKB: A0AAX6QLT4 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
NCBI Gene Gpa33 ENTREZGENE
UniProt A0AAX6QLT4 ENTREZGENE, UniProtKB/TrEMBL