Sall2 (spalt like transcription factor 2) - Rat Genome Database

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Gene: Sall2 (spalt like transcription factor 2) Heterocephalus glaber
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Symbol: Sall2
Name: spalt like transcription factor 2
RGD ID: 18914132
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); protein-containing complex binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN eye development (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); coloboma (ortholog); cone-rod dystrophy 13 (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sal-like 2; sal-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248257,535,781 - 7,551,255 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248257,536,350 - 7,551,168 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Sall2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248257,535,781 - 7,551,255 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248257,536,350 - 7,551,168 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SALL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381421,521,080 - 21,537,121 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1421,521,080 - 21,537,216 (-)EnsemblGRCh38hg38GRCh38
GRCh371421,989,231 - 22,005,255 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361421,059,071 - 21,075,177 (-)NCBINCBI36Build 36hg18NCBI36
Build 341421,059,073 - 21,075,177NCBI
Celera141,852,573 - 1,868,687 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef142,107,011 - 2,123,312 (-)NCBIHuRef
CHM1_11421,990,699 - 22,006,805 (-)NCBICHM1_1
T2T-CHM13v2.01415,718,455 - 15,734,493 (-)NCBIT2T-CHM13v2.0
Sall2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391452,548,634 - 52,566,127 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1452,548,629 - 52,566,219 (-)EnsemblGRCm39 Ensembl
GRCm381452,311,177 - 52,328,670 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1452,311,172 - 52,328,762 (-)EnsemblGRCm38mm10GRCm38
MGSCv371452,930,856 - 52,948,345 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361451,233,132 - 51,250,621 (-)NCBIMGSCv36mm8
Celera1449,292,974 - 49,310,681 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1426.89NCBI
Sall2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81527,494,831 - 27,512,402 (-)NCBIGRCr8
mRatBN7.21525,021,345 - 25,038,918 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1525,021,345 - 25,038,918 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1527,793,960 - 27,811,590 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01528,748,132 - 28,765,710 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01527,001,083 - 27,018,660 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01528,728,471 - 28,746,042 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1528,728,140 - 28,746,042 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01532,538,672 - 32,556,550 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41527,762,131 - 27,779,639 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11527,779,048 - 27,829,900 (-)NCBI
Celera1525,325,491 - 25,343,094 (-)NCBICelera
Cytogenetic Map15p14NCBI
Sall2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555502,237,677 - 2,250,829 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555502,236,129 - 2,250,829 (-)NCBIChiLan1.0ChiLan1.0
SALL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,976,579 - 22,992,735 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11422,193,066 - 22,209,218 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,338,806 - 2,354,970 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11420,415,143 - 20,420,467 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1420,416,071 - 20,431,000 (-)Ensemblpanpan1.1panPan2
SALL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11518,558,181 - 18,571,941 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1518,558,178 - 18,561,547 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1519,041,419 - 19,055,960 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01518,815,934 - 18,830,491 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1518,817,612 - 18,830,432 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11518,497,854 - 18,512,393 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01518,554,049 - 18,568,589 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01518,682,902 - 18,697,452 (-)NCBIUU_Cfam_GSD_1.0
Sall2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864032,759,541 - 32,776,246 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936880668,789 - 685,594 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936880670,063 - 685,532 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SALL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl777,638,848 - 77,653,376 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1777,552,357 - 77,653,380 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2782,980,340 - 82,994,871 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SALL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,992,227 - 22,008,651 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2921,992,229 - 21,997,594 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605924,422,090 - 24,438,420 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000008393   ⟹   ENSHGLP00000008304
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248257,535,781 - 7,551,255 (-)Ensembl
RefSeq Acc Id: XM_004865053   ⟹   XP_004865110
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248257,536,350 - 7,551,168 (-)NCBI
RefSeq Acc Id: XM_004865054   ⟹   XP_004865111
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248257,536,350 - 7,541,514 (-)NCBI
RefSeq Acc Id: XM_004865055   ⟹   XP_004865112
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248257,536,350 - 7,551,167 (-)NCBI
RefSeq Acc Id: XM_013065734   ⟹   XP_012921188
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248257,536,350 - 7,541,513 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004865110 (Get FASTA)   NCBI Sequence Viewer  
  XP_004865111 (Get FASTA)   NCBI Sequence Viewer  
  XP_004865112 (Get FASTA)   NCBI Sequence Viewer  
  XP_012921188 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008304
RefSeq Acc Id: XP_004865110   ⟸   XM_004865053
- Peptide Label: isoform X1
- UniProtKB: A0AAX6Q4N5 (UniProtKB/TrEMBL),   G5BFU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004865112   ⟸   XM_004865055
- Peptide Label: isoform X3
- UniProtKB: A0AAX6Q0Z4 (UniProtKB/TrEMBL),   G5BFU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004865111   ⟸   XM_004865054
- Peptide Label: isoform X2
- UniProtKB: A0AAX6Q168 (UniProtKB/TrEMBL),   G5BFU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012921188   ⟸   XM_013065734
- Peptide Label: isoform X4
- UniProtKB: A0AAX6QLY9 (UniProtKB/TrEMBL),   G5BFU8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000008304   ⟸   ENSHGLT00000008393


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006009 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000008393 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Sal_C2H2-zinc-finger UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Sall2 ENTREZGENE
PANTHER SAL-LIKE PROTEIN UniProtKB/TrEMBL
  SAL-LIKE PROTEIN 2 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt A0AAX6Q0Z4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6Q168 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6Q4N5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QLY9 ENTREZGENE, UniProtKB/TrEMBL
  G5BFU8 ENTREZGENE, UniProtKB/TrEMBL