Slc22a15 (solute carrier family 22 member 15) - Rat Genome Database

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Gene: Slc22a15 (solute carrier family 22 member 15) Heterocephalus glaber
Analyze
Symbol: Slc22a15
Name: solute carrier family 22 member 15
RGD ID: 18913950
Description: ENCODES a protein that exhibits amino-acid betaine transmembrane transporter activity (ortholog); INVOLVED IN transmembrane transport (inferred); ASSOCIATED WITH catecholaminergic polymorphic ventricular tachycardia 1 (ortholog); Colorectal Neoplasms (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477211,740,766 - 11,809,979 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477211,740,843 - 11,811,790 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Slc22a15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477211,740,766 - 11,809,979 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477211,740,843 - 11,811,790 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC22A15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381115,976,513 - 116,070,054 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1115,976,513 - 116,070,054 (+)EnsemblGRCh38hg38GRCh38
GRCh371116,519,134 - 116,612,675 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361116,320,642 - 116,413,548 (+)NCBINCBI36Build 36hg18NCBI36
Build 341116,231,163 - 116,324,068NCBI
Celera1114,747,861 - 114,841,388 (+)NCBICelera
Cytogenetic Map1p13.1NCBI
HuRef1114,392,466 - 114,470,555 (+)NCBIHuRef
CHM1_11116,633,879 - 116,727,416 (+)NCBICHM1_1
T2T-CHM13v2.01115,984,504 - 116,078,027 (+)NCBIT2T-CHM13v2.0
Slc22a15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393101,763,084 - 101,831,769 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3101,763,092 - 101,831,769 (-)EnsemblGRCm39 Ensembl
GRCm383101,854,443 - 101,928,220 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3101,855,776 - 101,924,453 (-)EnsemblGRCm38mm10GRCm38
MGSCv373101,659,691 - 101,728,376 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363101,989,181 - 102,054,259 (-)NCBIMGSCv36mm8
Celera3104,067,580 - 104,129,833 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map344.3NCBI
Slc22a15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82191,987,409 - 192,049,859 (-)NCBIGRCr8
mRatBN7.22189,298,836 - 189,359,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2189,298,832 - 189,358,792 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2196,931,604 - 196,991,547 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02194,783,864 - 194,843,842 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02189,609,738 - 189,669,733 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02204,281,638 - 204,344,026 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2204,281,638 - 204,341,676 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02223,715,478 - 223,777,419 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42196,953,291 - 197,013,763 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12196,917,484 - 196,998,777 (-)NCBI
Celera2181,732,924 - 181,792,876 (-)NCBICelera
Cytogenetic Map2q34NCBI
Slc22a15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543519,183,832 - 19,262,041 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543519,183,832 - 19,260,412 (+)NCBIChiLan1.0ChiLan1.0
SLC22A15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21108,624,455 - 108,718,738 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11108,224,765 - 108,318,069 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0186,497,379 - 86,591,157 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11121,546,807 - 121,625,147 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1121,547,438 - 121,628,151 (-)Ensemblpanpan1.1panPan2
SLC22A15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11753,471,790 - 53,539,488 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1753,476,041 - 53,537,573 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1753,106,735 - 53,187,917 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01754,338,639 - 54,419,951 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1754,338,686 - 54,417,942 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11753,377,726 - 53,459,032 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01753,413,039 - 53,494,576 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01753,985,758 - 54,067,070 (+)NCBIUU_Cfam_GSD_1.0
Slc22a15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505813,193,496 - 13,251,292 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366271,240,385 - 1,295,099 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366271,237,714 - 1,295,639 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4104,664,015 - 104,755,672 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14104,662,844 - 104,755,667 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC22A15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12017,645,511 - 17,808,245 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2017,649,489 - 17,732,538 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603820,345,154 - 20,438,357 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000015630   ⟹   ENSHGLP00000015470
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477211,740,766 - 11,809,979 (+)Ensembl
RefSeq Acc Id: XM_004853796   ⟹   XP_004853853
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477211,740,843 - 11,811,790 (+)NCBI
RefSeq Acc Id: XM_021265743   ⟹   XP_021121402
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477211,748,109 - 11,811,790 (+)NCBI
RefSeq Acc Id: XR_002397974
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477211,748,103 - 11,811,790 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004853853 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121402 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015470
RefSeq Acc Id: XP_004853853   ⟸   XM_004853796
- Peptide Label: isoform X2
- UniProtKB: G5BFJ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121402   ⟸   XM_021265743
- Peptide Label: isoform X1
- UniProtKB: G5BFJ9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000015470   ⟸   ENSHGLT00000015630


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011061 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015630 ENTREZGENE
Gene3D-CATH MFS general substrate transporter like domains UniProtKB/TrEMBL
InterPro MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
NCBI Gene Slc22a15 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 22 MEMBER 15 UniProtKB/TrEMBL
Pfam Sugar_tr UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP MFS general substrate transporter UniProtKB/TrEMBL
UniProt A0AAX6PKV7_HETGA UniProtKB/TrEMBL
  A0AAX6TLU8_HETGA UniProtKB/TrEMBL
  G5BFJ9 ENTREZGENE, UniProtKB/TrEMBL