Ttc31 (tetratricopeptide repeat domain 31) - Rat Genome Database

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Gene: Ttc31 (tetratricopeptide repeat domain 31) Heterocephalus glaber
Analyze
Symbol: Ttc31
Name: tetratricopeptide repeat domain 31
RGD ID: 18913538
Description: ASSOCIATED WITH congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); Methylmalonyl-CoA Epimerase Deficiency (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat protein 31
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474929,018,219 - 29,026,826 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ttc31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474929,018,219 - 29,026,826 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TTC31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38274,483,081 - 74,494,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl274,483,073 - 74,494,559 (+)EnsemblGRCh38hg38GRCh38
GRCh37274,710,208 - 74,721,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,563,724 - 74,575,191 (+)NCBINCBI36Build 36hg18NCBI36
Celera274,541,365 - 74,552,855 (+)NCBICelera
Cytogenetic Map2p13.1NCBI
HuRef274,446,461 - 74,457,952 (+)NCBIHuRef
CHM1_1274,639,609 - 74,651,101 (+)NCBICHM1_1
T2T-CHM13v2.0274,491,645 - 74,503,123 (+)NCBIT2T-CHM13v2.0
Ttc31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,295,222 - 11,304,885 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,297,666 - 11,304,937 (-)NCBIChiLan1.0ChiLan1.0
TTC31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21251,892,695 - 51,906,189 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A51,895,442 - 51,908,925 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A74,549,680 - 74,563,164 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A76,056,421 - 76,067,481 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A76,056,437 - 76,067,481 (+)Ensemblpanpan1.1panPan2
TTC31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,647,765 - 48,655,413 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1748,647,504 - 48,656,066 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,289,624 - 48,297,321 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01749,505,656 - 49,514,676 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1749,505,678 - 49,514,443 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11748,522,779 - 48,531,802 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01748,589,530 - 48,598,563 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01749,147,247 - 49,156,265 (-)NCBIUU_Cfam_GSD_1.0
Ttc31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629210,028,833 - 10,036,992 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936556701,037 - 709,302 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936556700,972 - 709,058 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl368,555,232 - 68,564,007 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1368,555,230 - 68,570,912 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,880,252 - 71,888,752 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTC31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11432,783,336 - 32,795,245 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1432,784,347 - 32,795,106 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604579,376,022 - 79,387,964 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021258269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01030238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021258269   ⟹   XP_021113928
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474929,018,219 - 29,026,826 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021113928 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021113928   ⟸   XM_021258269
- UniProtKB: G5AXF2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH Tetratricopeptide repeat domain UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene Ttc31 ENTREZGENE
PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 31 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 31 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP TPR-like UniProtKB/TrEMBL
UniProt G5AXF2 ENTREZGENE, UniProtKB/TrEMBL