Bcas2 (BCAS2 pre-mRNA processing factor) - Rat Genome Database

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Gene: Bcas2 (BCAS2 pre-mRNA processing factor) Heterocephalus glaber
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Symbol: Bcas2
Name: BCAS2 pre-mRNA processing factor
RGD ID: 18913375
Description: INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); mRNA splicing, via spliceosome (ortholog); oocyte development (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH breast cancer (ortholog); diffuse large B-cell lymphoma (ortholog); hereditary spastic paraplegia 47 (ortholog); FOUND IN centrosome (ortholog); DNA replication factor A complex (ortholog); nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: breast carcinoma amplified sequence 2; Pre-mRNA-splicing factor SPF27
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477210,214,000 - 10,224,712 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477210,210,505 - 10,224,705 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Bcas2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477210,214,000 - 10,224,712 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477210,210,505 - 10,224,705 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BCAS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381114,567,557 - 114,581,615 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1114,567,557 - 114,581,629 (-)EnsemblGRCh38hg38GRCh38
GRCh371115,110,178 - 115,124,236 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361114,911,701 - 114,925,788 (-)NCBINCBI36Build 36hg18NCBI36
Build 341114,822,222 - 114,836,307NCBI
Celera1113,339,412 - 113,353,499 (-)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1112,968,613 - 112,982,698 (-)NCBIHuRef
CHM1_11115,225,038 - 115,239,118 (-)NCBICHM1_1
T2T-CHM13v2.01114,579,016 - 114,593,070 (-)NCBIT2T-CHM13v2.0
Bcas2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393103,078,971 - 103,086,479 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3103,078,971 - 103,086,482 (+)EnsemblGRCm39 Ensembl
GRCm383103,171,655 - 103,179,163 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3103,171,655 - 103,179,166 (+)EnsemblGRCm38mm10GRCm38
MGSCv373102,975,634 - 102,983,086 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363103,300,772 - 103,308,224 (+)NCBIMGSCv36mm8
Celera3105,376,720 - 105,384,210 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.25NCBI
Bcas2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82193,381,000 - 193,388,881 (+)NCBIGRCr8
mRatBN7.22190,692,503 - 190,700,386 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2190,692,461 - 190,700,389 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2198,290,002 - 198,297,851 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02196,162,441 - 196,170,356 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02190,979,700 - 190,987,549 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02205,662,633 - 205,670,514 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2205,662,588 - 205,670,511 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02225,092,498 - 225,100,379 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42198,405,211 - 198,413,092 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12198,367,979 - 198,375,843 (+)NCBI
Celera2183,165,971 - 183,173,852 (+)NCBICelera
Cytogenetic Map2q34NCBI
Bcas2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543517,846,466 - 17,857,356 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543517,830,532 - 17,857,360 (-)NCBIChiLan1.0ChiLan1.0
BCAS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21107,229,868 - 107,244,071 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11106,824,004 - 106,838,041 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0187,972,721 - 87,986,819 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11123,024,910 - 123,039,073 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1123,024,910 - 123,039,068 (+)Ensemblpanpan1.1panPan2
BCAS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11752,277,677 - 52,291,150 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1752,277,804 - 52,291,022 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1751,927,989 - 51,941,687 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01753,153,476 - 53,167,183 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1753,013,752 - 53,167,062 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11752,188,958 - 52,202,646 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01752,230,825 - 52,244,520 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01752,804,123 - 52,817,822 (-)NCBIUU_Cfam_GSD_1.0
Bcas2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505814,564,300 - 14,577,734 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366902,900,002 - 2,913,381 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366902,900,003 - 2,913,427 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCAS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4105,992,452 - 106,003,150 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14105,992,558 - 106,003,160 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24116,180,390 - 116,190,993 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BCAS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12019,084,908 - 19,099,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2019,084,954 - 19,099,590 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603821,841,107 - 21,855,547 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000019307   ⟹   ENSHGLP00000019116
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477210,214,000 - 10,224,712 (-)Ensembl
RefSeq Acc Id: XM_004853779   ⟹   XP_004853836
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477210,210,505 - 10,224,699 (-)NCBI
RefSeq Acc Id: XM_021265726   ⟹   XP_021121385
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477210,210,505 - 10,224,705 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004853836 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121385 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00307 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019116
GenBank Protein JAN99449 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021121385   ⟸   XM_021265726
- Peptide Label: isoform X2
- UniProtKB: A0AAX6TJZ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004853836   ⟸   XM_004853779
- Peptide Label: isoform X1
- UniProtKB: G5ATE6 (UniProtKB/TrEMBL),   G5BDY5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000019116   ⟸   ENSHGLT00000019307


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013708 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019307 ENTREZGENE
InterPro SPF27 UniProtKB/TrEMBL
KEGG Report hgl:101718582 UniProtKB/TrEMBL
NCBI Gene Bcas2 ENTREZGENE
PANTHER PRE-MRNA-SPLICING FACTOR SPF27 UniProtKB/TrEMBL
  PTHR13296 UniProtKB/TrEMBL
Pfam BCAS2 UniProtKB/TrEMBL
UniProt A0AAX6TJZ0 ENTREZGENE, UniProtKB/TrEMBL
  G5ATE6 ENTREZGENE, UniProtKB/TrEMBL
  G5BDY5 ENTREZGENE, UniProtKB/TrEMBL