Snupn (snurportin 1) - Rat Genome Database

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Gene: Snupn (snurportin 1) Heterocephalus glaber
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Symbol: Snupn
Name: snurportin 1
RGD ID: 18913117
Description: ENCODES a protein that exhibits nuclear import signal receptor activity (inferred); RNA binding (inferred); INVOLVED IN cytoskeleton organization (ortholog); protein complex oligomerization (ortholog); protein tetramerization (ortholog); ASSOCIATED WITH Autosomal Recessive Limb-Girdle Muscular Dystrophy Type 29 (ortholog); Bloom syndrome (ortholog); chromosome 15q24 deletion syndrome (ortholog); FOUND IN cytosol (ortholog); NLS-dependent protein nuclear import complex (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: snurportin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624894490,892 - 506,295 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624894487,110 - 529,775 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snupn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624894490,892 - 506,295 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624894487,110 - 529,775 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SNUPN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381575,598,086 - 75,626,461 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1575,598,083 - 75,626,469 (-)EnsemblGRCh38hg38GRCh38
GRCh371575,890,427 - 75,918,802 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361573,677,479 - 73,705,774 (-)NCBINCBI36Build 36hg18NCBI36
Build 341573,677,479 - 73,705,132NCBI
Celera1552,816,555 - 52,843,715 (-)NCBICelera
Cytogenetic Map15q24.2NCBI
HuRef1552,648,179 - 52,675,001 (-)NCBIHuRef
CHM1_11576,009,938 - 76,038,212 (-)NCBICHM1_1
T2T-CHM13v2.01573,468,790 - 73,497,167 (-)NCBIT2T-CHM13v2.0
Snupn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39956,855,158 - 56,893,545 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl956,858,162 - 56,890,490 (+)EnsemblGRCm39 Ensembl
GRCm38956,949,419 - 56,986,261 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl956,950,878 - 56,983,206 (+)EnsemblGRCm38mm10GRCm38
MGSCv37956,798,731 - 56,831,006 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36956,749,061 - 56,781,336 (+)NCBIMGSCv36mm8
Celera954,176,012 - 54,208,260 (+)NCBICelera
Cytogenetic Map9BNCBI
cM Map930.57NCBI
Snupn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8866,242,940 - 66,286,651 (+)NCBIGRCr8
mRatBN7.2857,347,412 - 57,388,345 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl857,348,130 - 57,380,912 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx862,871,545 - 62,904,309 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0861,150,388 - 61,183,151 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0859,014,829 - 59,047,594 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0861,614,798 - 61,654,809 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl861,615,650 - 61,648,390 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0860,184,262 - 60,224,290 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4860,694,018 - 60,726,694 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1860,713,071 - 60,745,743 (+)NCBI
Celera856,816,464 - 56,849,116 (+)NCBICelera
Cytogenetic Map8q24NCBI
Snupn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554502,691,617 - 2,722,150 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554502,701,496 - 2,720,971 (+)NCBIChiLan1.0ChiLan1.0
SNUPN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21664,793,879 - 64,821,585 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11568,957,744 - 68,985,777 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01554,508,586 - 54,536,301 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11574,102,744 - 74,151,065 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1574,102,753 - 74,126,511 (-)Ensemblpanpan1.1panPan2
SNUPN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13038,401,016 - 38,422,885 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3038,401,192 - 38,432,686 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3038,331,424 - 38,354,995 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03038,606,443 - 38,630,072 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3038,606,449 - 38,629,967 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13038,558,080 - 38,581,589 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03038,602,795 - 38,626,664 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03038,840,276 - 38,863,881 (-)NCBIUU_Cfam_GSD_1.0
Snupn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640116,525,429 - 116,545,094 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647134,373,468 - 34,393,692 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647134,373,492 - 34,393,666 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNUPN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl758,038,995 - 58,071,243 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1758,038,917 - 58,065,972 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2762,728,090 - 62,755,132 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNUPN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1267,806,698 - 7,835,477 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048133,860,368 - 133,889,349 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000000652   ⟹   ENSHGLP00000000612
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624894490,892 - 506,295 (-)Ensembl
RefSeq Acc Id: XM_004872053   ⟹   XP_004872110
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624894487,110 - 529,775 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004872110 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000000612
GenBank Protein JAO02909 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004872110   ⟸   XM_004872053
- UniProtKB: A0A0P6K888 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000000612   ⟸   ENSHGLT00000000652


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000536 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000000652 ENTREZGENE
Gene3D-CATH DNA ligase/mRNA capping enzyme UniProtKB/TrEMBL
InterPro Importin-a_IBB UniProtKB/TrEMBL
  Snurportin-1 UniProtKB/TrEMBL
  Snurportin-1_N UniProtKB/TrEMBL
  Snurportin1_C UniProtKB/TrEMBL
NCBI Gene Snupn ENTREZGENE
PANTHER PTHR13403 UniProtKB/TrEMBL
  SNURPORTIN-1 UniProtKB/TrEMBL
Pfam Snurportin1 UniProtKB/TrEMBL
  SPN1_m3Gcap_bd UniProtKB/TrEMBL
PIRSF Snurportin-1 UniProtKB/TrEMBL
PROSITE IBB UniProtKB/TrEMBL
Superfamily-SCOP DNA ligase/mRNA capping enzyme, catalytic domain UniProtKB/TrEMBL
UniProt A0A0P6K888 ENTREZGENE, UniProtKB/TrEMBL