Ccsap (centriole, cilia and spindle associated protein) - Rat Genome Database

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Gene: Ccsap (centriole, cilia and spindle associated protein) Heterocephalus glaber
Analyze
Symbol: Ccsap
Name: centriole, cilia and spindle associated protein
RGD ID: 18912041
Description: ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN mitotic spindle microtubule depolymerization (ortholog); regulation of mitotic spindle assembly (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN axon (ortholog); axoneme (ortholog); centriole (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centriole, cilia and spindle-associated protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477519,694,087 - 19,713,650 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477519,693,987 - 19,715,937 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ccsap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477519,694,087 - 19,713,650 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477519,693,987 - 19,715,937 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CCSAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381229,321,015 - 229,343,047 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1229,321,011 - 229,343,294 (-)EnsemblGRCh38hg38GRCh38
GRCh371229,456,762 - 229,478,794 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,523,382 - 227,545,358 (-)NCBINCBI36Build 36hg18NCBI36
Celera1202,725,069 - 202,747,007 (-)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1199,947,395 - 199,969,335 (-)NCBIHuRef
CHM1_11230,729,073 - 230,751,009 (-)NCBICHM1_1
T2T-CHM13v2.01228,699,674 - 228,721,751 (-)NCBIT2T-CHM13v2.0
Ccsap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,566,712 - 124,586,948 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,567,570 - 124,586,948 (-)EnsemblGRCm39 Ensembl
GRCm388123,839,973 - 123,860,209 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,840,831 - 123,860,209 (-)EnsemblGRCm38mm10GRCm38
MGSCv378126,364,744 - 126,384,109 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,726,917 - 126,746,752 (-)NCBIMGSCv36mm8
Celera8128,108,117 - 128,127,086 (-)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.22NCBI
Ccsap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,722,417 - 68,740,908 (-)NCBIGRCr8
mRatBN7.21951,824,954 - 51,843,469 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,826,994 - 51,842,753 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,618,312 - 58,634,329 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01959,463,019 - 59,478,781 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01961,544,736 - 61,560,759 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01956,615,326 - 56,634,031 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,617,399 - 56,633,633 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01967,325,673 - 67,344,357 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,023,536 - 54,039,295 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1951,202,808 - 51,218,570 (-)NCBICelera
Cytogenetic Map19q12NCBI
Ccsap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554928,685,667 - 8,700,306 (+)NCBIChiLan1.0ChiLan1.0
CCSAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2119,869,216 - 19,891,296 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1120,061,493 - 20,083,578 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01204,865,261 - 204,887,279 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11209,898,803 - 209,919,392 (-)NCBIpanpan1.1PanPan1.1panPan2
CCSAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.149,878,171 - 9,896,962 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl49,878,186 - 9,893,572 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha49,881,370 - 9,888,329 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.049,920,899 - 9,927,859 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.149,925,054 - 9,931,784 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0410,038,852 - 10,045,591 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0410,292,284 - 10,299,028 (+)NCBIUU_Cfam_GSD_1.0
Ccsap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934444,082,957 - 44,110,725 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648420,271,834 - 20,277,945 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCSAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1460,445,574 - 60,464,599 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11460,445,052 - 60,465,761 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21465,286,260 - 65,305,987 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCSAP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12566,593,506 - 66,611,462 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2566,589,906 - 66,610,999 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605568,435,894 - 68,458,209 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000010755   ⟹   ENSHGLP00000010635
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477519,694,087 - 19,713,650 (+)Ensembl
RefSeq Acc Id: XM_004854690   ⟹   XP_004854747
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477519,693,987 - 19,715,937 (+)NCBI
RefSeq Acc Id: XM_013075763   ⟹   XP_012931217
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477519,693,989 - 19,715,937 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004854747 (Get FASTA)   NCBI Sequence Viewer  
  XP_012931217 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004854747   ⟸   XM_004854690
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012931217   ⟸   XM_013075763
- Peptide Label: isoform X1
Ensembl Acc Id: ENSHGLP00000010635   ⟸   ENSHGLT00000010755


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007621 Ensembl
NCBI Gene Ccsap ENTREZGENE
UniProt A0AAX6PL75_HETGA UniProtKB/TrEMBL
  A0AAX6R008_HETGA UniProtKB/TrEMBL