Vmac (vimentin type intermediate filament associated coiled-coil protein) - Rat Genome Database

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Gene: Vmac (vimentin type intermediate filament associated coiled-coil protein) Heterocephalus glaber
Analyze
Symbol: Vmac
Name: vimentin type intermediate filament associated coiled-coil protein
RGD ID: 18911858
Description: FOUND IN type III intermediate filament (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vimentin-type intermediate filament-associated coiled-coil protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,316,530 - 4,318,589 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248284,314,968 - 4,319,222 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Vmac
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,316,530 - 4,318,589 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248284,314,968 - 4,319,222 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
VMAC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,904,872 - 5,910,853 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,904,872 - 5,910,853 (+)EnsemblGRCh38hg38GRCh38
GRCh37195,904,883 - 5,910,864 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,855,894 - 5,861,263 (+)NCBINCBI36Build 36hg18NCBI36
Celera195,843,814 - 5,849,226 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef195,664,330 - 5,669,752 (+)NCBIHuRef
CHM1_1195,905,105 - 5,910,518 (+)NCBICHM1_1
T2T-CHM13v2.0195,892,302 - 5,898,294 (+)NCBIT2T-CHM13v2.0
Vmac
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,020,936 - 57,024,688 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,020,936 - 57,025,022 (-)EnsemblGRCm39 Ensembl
GRCm381756,713,932 - 56,717,699 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,713,936 - 56,718,022 (-)EnsemblGRCm38mm10GRCm38
MGSCv371756,853,355 - 56,857,122 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,399,062 - 56,401,976 (-)NCBIMGSCv36mm8
Celera1761,058,067 - 61,061,834 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.47NCBI
Vmac
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,633,874 - 1,637,538 (-)NCBIGRCr8
mRatBN7.291,546,747 - 1,550,417 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,546,747 - 1,549,771 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,982,464 - 1,983,718 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,331,550 - 7,332,804 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,287,661 - 6,288,915 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,338,260 - 10,341,903 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,339,075 - 10,340,329 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,335,290 - 9,338,983 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,967,173 - 6,968,428 (+)NCBICelera
Cytogenetic Map9q11NCBI
Vmac
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,554,567 - 3,555,973 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554953,553,025 - 3,556,726 (-)NCBIChiLan1.0ChiLan1.0
VMAC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,179,302 - 54,182,607 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,180,902 - 54,182,571 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,922,805 - 53,926,072 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,830,492 - 54,833,760 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12053,896,895 - 53,900,160 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,345,763 - 54,349,024 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,575,932 - 54,579,199 (-)NCBIUU_Cfam_GSD_1.0
Vmac
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,440,117 - 214,444,298 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,391,140 - 3,394,596 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,391,116 - 3,394,642 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VMAC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.165,525,250 - 5,525,993 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl65,525,271 - 5,525,585 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660812,501,115 - 2,506,868 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004865662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01083349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000020603   ⟹   ENSHGLP00000020401
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248284,316,530 - 4,318,589 (-)Ensembl
RefSeq Acc Id: XM_004865662   ⟹   XP_004865719
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248284,314,968 - 4,319,222 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004865719 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004865719   ⟸   XM_004865662
- UniProtKB: A0AAX6Q661 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000020401   ⟸   ENSHGLT00000020603


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014583 Ensembl
NCBI Gene Vmac ENTREZGENE
UniProt A0AAX6Q661 ENTREZGENE, UniProtKB/TrEMBL