Gpatch3 (G-patch domain containing 3) - Rat Genome Database

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Gene: Gpatch3 (G-patch domain containing 3) Heterocephalus glaber
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Symbol: Gpatch3
Name: G-patch domain containing 3
RGD ID: 18911244
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); INVOLVED IN negative regulation of RIG-I signaling pathway (inferred); negative regulation of type I interferon production (inferred); positive regulation of DNA-templated transcription (inferred); ASSOCIATED WITH retinitis pigmentosa 59 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: G patch domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476410,879,556 - 10,889,146 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476410,879,342 - 10,889,175 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gpatch3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476410,879,556 - 10,889,146 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476410,879,342 - 10,889,175 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GPATCH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,890,488 - 26,900,467 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,890,488 - 26,900,467 (-)EnsemblGRCh38hg38GRCh38
GRCh37127,216,979 - 27,226,958 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,089,567 - 27,099,544 (-)NCBINCBI36Build 36hg18NCBI36
Build 34126,901,121 - 26,911,099NCBI
Celera125,614,074 - 25,624,058 (-)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef125,470,561 - 25,480,545 (-)NCBIHuRef
CHM1_1127,330,339 - 27,340,322 (-)NCBICHM1_1
T2T-CHM13v2.0126,728,551 - 26,738,530 (-)NCBIT2T-CHM13v2.0
Gpatch3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394133,302,056 - 133,311,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4133,302,056 - 133,311,554 (+)EnsemblGRCm39 Ensembl
GRCm384133,574,745 - 133,584,242 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4133,574,745 - 133,584,243 (+)EnsemblGRCm38mm10GRCm38
MGSCv374133,130,660 - 133,140,157 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364131,142,823 - 131,152,322 (+)NCBIMGSCv36mm8
MGSCv364132,846,821 - 132,856,318 (+)NCBIMGSCv36mm8
Celera4131,742,840 - 131,745,146 (+)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.25NCBI
Gpatch3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85151,083,970 - 151,093,382 (+)NCBIGRCr8
mRatBN7.25145,800,107 - 145,809,519 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5145,800,111 - 145,809,250 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5148,502,521 - 148,511,939 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05150,272,125 - 150,281,543 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05150,258,681 - 150,268,099 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05151,796,456 - 151,806,007 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5151,796,814 - 151,805,976 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05155,485,836 - 155,495,387 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45151,497,810 - 151,506,989 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15151,507,652 - 151,517,028 (-)NCBI
Celera5144,220,309 - 144,229,860 (+)NCBICelera
Cytogenetic Map5q36NCBI
Gpatch3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554526,234,241 - 6,241,991 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554526,234,241 - 6,241,949 (-)NCBIChiLan1.0ChiLan1.0
GPATCH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21199,969,503 - 199,979,611 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11199,073,610 - 199,083,715 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,153,078 - 26,163,181 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,209,795 - 27,220,006 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,209,795 - 27,220,107 (-)Ensemblpanpan1.1panPan2
GPATCH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,243,178 - 73,250,926 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,243,222 - 73,250,403 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,821,230 - 69,828,970 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,806,952 - 73,814,697 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,806,945 - 73,814,713 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1270,631,947 - 70,639,684 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,637,376 - 71,645,115 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,640,564 - 72,648,307 (+)NCBIUU_Cfam_GSD_1.0
Gpatch3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,473,914 - 45,485,387 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647411,298,620 - 11,310,637 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647411,298,802 - 11,310,609 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPATCH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl684,209,809 - 84,218,701 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1684,200,727 - 84,218,710 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2677,770,929 - 77,779,962 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPATCH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120105,853,831 - 105,873,276 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603310,556,677 - 10,568,589 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000017614   ⟹   ENSHGLP00000017440
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476410,879,556 - 10,889,146 (-)Ensembl
RefSeq Acc Id: XM_004850676   ⟹   XP_004850733
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476410,879,342 - 10,889,175 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004850733 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00785 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017440
RefSeq Acc Id: XP_004850733   ⟸   XM_004850676
- UniProtKB: G5AUS4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000017440   ⟸   ENSHGLT00000017614


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012492 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017614 ENTREZGENE
InterPro G_patch_dom UniProtKB/TrEMBL
  GPATCH3 UniProtKB/TrEMBL
NCBI Gene Gpatch3 ENTREZGENE
PANTHER G PATCH DOMAIN CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  G PATCH DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam G-patch UniProtKB/TrEMBL
PROSITE G_PATCH UniProtKB/TrEMBL
SMART G_patch UniProtKB/TrEMBL
UniProt G5AUS4 ENTREZGENE, UniProtKB/TrEMBL