Lrrc10b (leucine rich repeat containing 10B) - Rat Genome Database

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Gene: Lrrc10b (leucine rich repeat containing 10B) Heterocephalus glaber
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Symbol: Lrrc10b
Name: leucine rich repeat containing 10B
RGD ID: 18910765
Description: ASSOCIATED WITH Hereditary Paraganglioma-Pheochromocytoma Syndromes (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat-containing protein 10B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624926768,303 - 769,151 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624926767,577 - 769,177 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Lrrc10bNaked Mole-RatHereditary Paraganglioma-Pheochromocytoma Syndromes  ISOLRRC10B (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary Paraganglioma-Pheochromocytoma SyndromesClinVarPMID:22241717 more ...
Lrrc10bNaked Mole-Ratintellectual disability  ISOLRRC10B (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Lrrc10bNaked Mole-Ratleukocyte adhesion deficiency 3  ISOLRRC10B (Homo sapiens)8554872ClinVar Annotator: match by term: Leukocyte adhesion deficiency 3ClinVarPMID:28492532
Lrrc10bNaked Mole-Ratparaganglioma  ISOLRRC10B (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary Paragangliomas and PheochromocytomasClinVarPMID:22241717 more ...


Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Lrrc10bNaked Mole-Ratcytoplasm located_inIEAPANTHER:PTN009226106150520179 TreeGrafterGO_REF:0000118

PMID:22301074  



Lrrc10b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624926768,303 - 769,151 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624926767,577 - 769,177 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LRRC10B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,508,749 - 61,511,018 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1161,508,749 - 61,511,018 (+)EnsemblGRCh38hg38GRCh38
GRCh371161,276,221 - 61,278,490 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361161,033,047 - 61,033,925 (+)NCBINCBI36Build 36hg18NCBI36
Celera1158,611,635 - 58,613,853 (+)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1157,603,800 - 57,606,018 (+)NCBIHuRef
CHM1_11161,159,274 - 61,161,522 (+)NCBICHM1_1
T2T-CHM13v2.01161,497,629 - 61,499,898 (+)NCBIT2T-CHM13v2.0
Lrrc10b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,432,735 - 10,434,811 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1910,432,735 - 10,434,837 (-)EnsemblGRCm39 Ensembl
GRCm381910,455,371 - 10,457,447 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,455,371 - 10,457,473 (-)EnsemblGRCm38mm10GRCm38
MGSCv371910,530,579 - 10,531,937 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361910,523,134 - 10,541,362 (-)NCBIMGSCv36mm8
Celera1911,152,426 - 11,153,784 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map196.6NCBI
Lrrc10b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,521,402 - 216,522,630 (-)NCBIGRCr8
mRatBN7.21207,096,471 - 207,097,699 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1207,022,919 - 207,098,045 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1215,474,823 - 215,476,051 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,530,294 - 222,531,522 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01215,225,300 - 215,226,528 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01226,500,692 - 226,501,920 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1226,500,692 - 226,501,920 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01233,448,290 - 233,449,518 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,942,818 - 212,944,046 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1204,591,021 - 204,592,249 (-)NCBICelera
Cytogenetic Map1q43NCBI
Lrrc10b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555116,097,477 - 6,098,343 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555116,096,626 - 6,098,344 (-)NCBIChiLan1.0ChiLan1.0
LRRC10B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2962,676,796 - 62,679,065 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11163,720,500 - 63,722,770 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01156,808,113 - 56,810,381 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11160,170,686 - 60,172,684 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,169,003 - 60,171,543 (+)Ensemblpanpan1.1panPan2
LRRC10B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11854,928,483 - 54,930,469 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1854,929,548 - 54,930,426 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1853,503,060 - 53,505,003 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01855,975,886 - 55,977,844 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11855,035,852 - 55,037,800 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01854,656,390 - 54,658,338 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01855,538,003 - 55,539,951 (-)NCBIUU_Cfam_GSD_1.0
Lrrc10b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494711,447,947 - 11,452,685 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365811,562,896 - 1,563,660 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365811,561,775 - 1,566,507 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC10B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl210,016,206 - 10,018,292 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1210,016,195 - 10,019,573 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.229,567,223 - 9,570,586 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC10B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,335,838 - 12,338,048 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl112,336,980 - 12,337,855 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038109,712,898 - 109,715,200 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.
RefSeq Transcripts XM_004874442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01104931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000028916   ⟹   ENSHGLP00000028440
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624926768,303 - 769,151 (-)Ensembl
RefSeq Acc Id: XM_004874442   ⟹   XP_004874499
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624926767,577 - 769,177 (-)NCBI
Protein RefSeqs XP_004874499 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028440
RefSeq Acc Id: XP_004874499   ⟸   XM_004874442
- UniProtKB: A0AAX6QEY4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000028440   ⟸   ENSHGLT00000028916



1 to 16 of 16 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000020706 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000028916 ENTREZGENE
Gene3D-CATH Ribonuclease Inhibitor UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRR_domain-containing UniProtKB/TrEMBL
NCBI Gene Lrrc10b ENTREZGENE
PANTHER PTHR48051 UniProtKB/TrEMBL
  RAS SUPPRESSOR PROTEIN 1 UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_BAC UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0AAX6QEY4 ENTREZGENE, UniProtKB/TrEMBL
1 to 16 of 16 rows