Psors1c2 (psoriasis susceptibility 1 candidate 2) - Rat Genome Database

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Gene: Psors1c2 (psoriasis susceptibility 1 candidate 2) Heterocephalus glaber
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Symbol: Psors1c2
Name: psoriasis susceptibility 1 candidate 2
RGD ID: 18910411
Description: ASSOCIATED WITH megacolon (ortholog); multiple myeloma (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: psoriasis susceptibility 1 candidate gene 2 protein; psoriasis susceptibility 1 candidate gene 2 protein homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,783,761 - 24,785,331 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,783,528 - 24,785,397 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Psors1c2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,783,761 - 24,785,331 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,783,528 - 24,785,397 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PSORS1C2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,137,534 - 31,139,066 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,137,534 - 31,139,066 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,105,311 - 31,106,843 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,213,290 - 31,215,106 (-)NCBINCBI36Build 36hg18NCBI36
Build 34631,213,289 - 31,215,097NCBI
Celera632,705,537 - 32,707,353 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,907,791 - 30,909,607 (-)NCBIHuRef
CHM1_1631,107,395 - 31,109,211 (-)NCBICHM1_1
T2T-CHM13v2.0631,005,228 - 31,006,760 (-)NCBIT2T-CHM13v2.0
Psors1c2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,842,462 - 35,845,544 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,844,098 - 35,845,544 (+)EnsemblGRCm39 Ensembl
GRCm381735,533,201 - 35,534,647 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,533,201 - 35,534,647 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,670,146 - 35,671,592 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,141,322 - 35,142,698 (+)NCBIMGSCv36mm8
Celera1739,048,039 - 39,049,485 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.7NCBI
Psors1c2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,206,886 - 3,208,307 (-)NCBIGRCr8
mRatBN7.2203,202,178 - 3,203,599 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,202,174 - 3,203,599 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx203,263,916 - 3,264,904 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,268,887 - 3,269,875 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0203,293,084 - 3,294,073 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,727,817 - 3,728,805 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,727,419 - 3,728,844 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,815,020 - 5,816,008 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera20629,735 - 630,723 (-)NCBICelera
Cytogenetic Map20p12NCBI
Psors1c2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583974,890 - 976,777 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955583975,037 - 977,944 (-)NCBIChiLan1.0ChiLan1.0
PSORS1C2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,699,553 - 45,700,940 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,662,768 - 41,664,689 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,883,467 - 30,888,231 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,748,923 - 31,750,739 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,748,923 - 31,750,739 (-)Ensemblpanpan1.1panPan2
CCHCR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112837,986 - 840,490 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12837,993 - 854,978 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12975,622 - 978,107 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012111,814 - 114,270 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1297,456 - 114,270 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112841,841 - 844,312 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012910,045 - 912,527 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012977,620 - 980,122 (-)NCBIUU_Cfam_GSD_1.0
Psors1c2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494634,441,415 - 34,443,717 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837807,079 - 808,071 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936837806,668 - 808,585 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSORS1C2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,540,344 - 23,542,930 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,540,341 - 23,543,136 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,290,516 - 27,293,281 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSORS1C2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,336,262 - 41,339,413 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,337,779 - 41,338,992 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604430,828,589 - 30,831,049 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000017197   ⟹   ENSHGLP00000017026
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475424,783,761 - 24,785,331 (+)Ensembl
RefSeq Acc Id: XM_004847042   ⟹   XP_004847099
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,783,528 - 24,785,397 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004847099 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16043 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004847099   ⟸   XM_004847042
- UniProtKB: A0AAX6PAV2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000017026   ⟸   ENSHGLT00000017197


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012187 Ensembl
InterPro SPR1 UniProtKB/TrEMBL
KEGG Report hgl:101725645 UniProtKB/TrEMBL
NCBI Gene Psors1c2 ENTREZGENE
PANTHER PSORIASIS SUSCEPTIBILITY 1 CANDIDATE GENE 2 PROTEIN UniProtKB/TrEMBL
  PTHR31853 UniProtKB/TrEMBL
Pfam SPR1 UniProtKB/TrEMBL
UniProt A0AAX6PAV2 ENTREZGENE, UniProtKB/TrEMBL
  G5C3D2_HETGA UniProtKB/TrEMBL