Tex30 (testis expressed 30) - Rat Genome Database

Name: Tex30
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Tex30 (testis expressed 30) Heterocephalus glaber

Analyze

Symbol:

Tex30

Name:

testis expressed 30

RGD ID:

18910206

Description:

ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Evans Syndrome, Immunodeficiency, and Premature Immunosenescence associated with Tripeptidyl-Peptidase II Deficiency (ortholog); holoprosencephaly 5 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

testis-expressed protein 30; testis-expressed sequence 30 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TEX30 (testis expressed 30)	NCBI	Ortholog
Mus musculus (house mouse):	Tex30 (testis expressed 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tex30 (testis expressed 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tex30 (testis expressed 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TEX30 (testis expressed 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TEX30 (testis expressed 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tex30 (testis expressed 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TEX30 (testis expressed 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TEX30 (testis expressed 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	8,721,762 - 8,728,505 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624793	8,721,772 - 8,728,298 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Anal Atresia, Hypospadias, and Penoscrotal Inversion (ISO)

Evans Syndrome, Immunodeficiency, and Premature Immunosenescence associated with Tripeptidyl-Peptidase II Deficiency (ISO)

holoprosencephaly 5 (ISO)

propionic acidemia (ISO)

References

Genomics

Comparative Map Data

Tex30
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	8,721,762 - 8,728,505 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624793	8,721,772 - 8,728,298 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

TEX30
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	102,765,888 - 102,773,786 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	102,765,888 - 102,773,811 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	103,418,238 - 103,426,136 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	102,216,461 - 102,224,143 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	13	84,262,890 - 84,270,580 (-)	NCBI		Celera
Cytogenetic Map	13	q33.1	NCBI
HuRef	13	84,010,751 - 84,018,441 (-)	NCBI		HuRef
CHM1_1	13	103,387,894 - 103,395,585 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	101,983,926 - 101,991,831 (-)	NCBI		T2T-CHM13v2.0

Tex30
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	44,125,773 - 44,141,650 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	44,125,773 - 44,141,601 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	44,086,613 - 44,102,491 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	44,086,613 - 44,102,441 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	44,143,462 - 44,159,233 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	44,031,159 - 44,046,987 (-)	NCBI		MGSCv36	mm8
Celera	1	44,429,497 - 44,445,910 (-)	NCBI		Celera
Cytogenetic Map	1	C1.1	NCBI
cM Map	1	23.54	NCBI

Tex30
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	53,735,512 - 53,744,672 (-)	NCBI		GRCr8
mRatBN7.2	9	46,243,416 - 46,252,273 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	46,242,748 - 46,252,249 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	54,758,886 - 54,767,721 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	59,881,686 - 59,890,521 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	58,161,923 - 58,170,758 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	50,858,737 - 50,868,238 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	50,858,737 - 50,868,238 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	50,525,698 - 50,535,199 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	43,181,528 - 43,191,029 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	43,183,612 - 43,192,413 (-)	NCBI
Celera	9	43,946,413 - 43,955,915 (-)	NCBI		Celera
Cytogenetic Map	9	q22	NCBI

Tex30
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955404	8,390,625 - 8,396,625 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955404	8,390,635 - 8,394,761 (+)	NCBI	ChiLan1.0	ChiLan1.0

TEX30
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	104,285,004 - 104,293,018 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	102,951,910 - 102,960,960 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	83,927,705 - 83,936,447 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	103,063,419 - 103,071,173 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	103,063,419 - 103,071,173 (-)	Ensembl	panpan1.1		panPan2

TEX30
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	52,260,841 - 52,267,711 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	52,260,841 - 52,267,664 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	52,040,515 - 52,047,389 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	52,708,502 - 52,715,376 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	52,703,038 - 52,716,057 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	52,361,094 - 52,367,974 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	52,377,152 - 52,384,032 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	52,418,347 - 52,425,228 (-)	NCBI		UU_Cfam_GSD_1.0

Tex30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	187,653,316 - 187,658,785 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	8,294,400 - 8,300,967 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	8,294,024 - 8,298,834 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TEX30
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	71,077,728 - 71,084,646 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	71,077,717 - 71,085,063 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	78,369,208 - 78,376,537 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TEX30
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	81,327,487 - 81,336,113 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	81,327,986 - 81,331,592 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666046	37,864,514 - 37,873,157 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_004858574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013077294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021239348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021239349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01066736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AHKG01066737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GEBF01000970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSHGLT00000001290 ⟹ ENSHGLP00000001248

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624793	8,721,762 - 8,728,030 (+)	Ensembl

RefSeq Acc Id:

ENSHGLT00000001291 ⟹ ENSHGLP00000001249

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624793	8,722,810 - 8,728,505 (+)	Ensembl

RefSeq Acc Id:

XM_004858574 ⟹ XP_004858631

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624793	8,721,772 - 8,728,298 (+)	NCBI

RefSeq Acc Id:

XM_013077294 ⟹ XP_012932748

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624793	8,721,785 - 8,728,298 (+)	NCBI

RefSeq Acc Id:

XM_021239348 ⟹ XP_021095007

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624793	8,721,775 - 8,728,298 (+)	NCBI

RefSeq Acc Id:

XM_021239349 ⟹ XP_021095008

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624793	8,721,782 - 8,728,298 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_004858631	(Get FASTA)	NCBI Sequence Viewer
	XP_012932748	(Get FASTA)	NCBI Sequence Viewer
	XP_021095007	(Get FASTA)	NCBI Sequence Viewer
	XP_021095008	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000001248
	ENSHGLP00000001249
	ENSHGLP00100016756
GenBank Protein	JAO02663	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_004858631 ⟸ XM_004858574
- Peptide Label:	isoform X1
- UniProtKB:	A0A0P6K7V4 (UniProtKB/TrEMBL), G5B9M6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_021095007 ⟸ XM_021239348
- Peptide Label:	isoform X1
- UniProtKB:	A0A0P6K7V4 (UniProtKB/TrEMBL), G5B9M6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_021095008 ⟸ XM_021239349
- Peptide Label:	isoform X1
- UniProtKB:	A0A0P6K7V4 (UniProtKB/TrEMBL), G5B9M6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_012932748 ⟸ XM_013077294
- Peptide Label:	isoform X2
- UniProtKB:	G5B9M6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSHGLP00000001248 ⟸ ENSHGLT00000001290

RefSeq Acc Id:

ENSHGLP00000001249 ⟸ ENSHGLT00000001291

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000000973	Ensembl, ENTREZGENE
	ENSHGLG00100012365	UniProtKB/TrEMBL
Ensembl Transcript	ENSHGLT00000001290	ENTREZGENE
	ENSHGLT00000001291	ENTREZGENE
	ENSHGLT00100016936	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1820	UniProtKB/TrEMBL
InterPro	AB_hydrolase	UniProtKB/TrEMBL
	KANL3/Tex30_Abhydrolase	UniProtKB/TrEMBL
	NSL3/Tex30	UniProtKB/TrEMBL
KEGG Report	hgl:101699394	UniProtKB/TrEMBL
NCBI Gene	Tex30	ENTREZGENE
PANTHER	PTHR13136	UniProtKB/TrEMBL
	TESTIS-EXPRESSED PROTEIN 30	UniProtKB/TrEMBL
Pfam	Abhydrolase_11	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53474	UniProtKB/TrEMBL
UniProt	A0A0P6K7V4	ENTREZGENE, UniProtKB/TrEMBL
	G5B9M6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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