Ccdc110 (coiled-coil domain containing 110) - Rat Genome Database

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Gene: Ccdc110 (coiled-coil domain containing 110) Heterocephalus glaber
Analyze
Symbol: Ccdc110
Name: coiled-coil domain containing 110
RGD ID: 18909887
Description: ASSOCIATED WITH autistic disorder (ortholog); dilated cardiomyopathy (ortholog); Herpes Simplex Encephalitis 1 (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 110
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476916,310,048 - 16,328,789 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476916,309,257 - 16,329,154 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoskeleton  (IEA)
cytosol  (ISO)
nucleoplasm  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ccdc110
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476916,310,048 - 16,328,789 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476916,309,257 - 16,329,154 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CCDC110
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384185,445,182 - 185,471,733 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4185,445,182 - 185,471,752 (-)EnsemblGRCh38hg38GRCh38
GRCh374186,366,336 - 186,392,887 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364186,603,341 - 186,629,871 (-)NCBINCBI36Build 36hg18NCBI36
Celera4183,693,987 - 183,720,463 (-)NCBICelera
Cytogenetic Map4q35.1NCBI
HuRef4182,120,079 - 182,146,758 (-)NCBIHuRef
CHM1_14186,342,774 - 186,369,536 (-)NCBICHM1_1
T2T-CHM13v2.04188,788,463 - 188,815,286 (-)NCBIT2T-CHM13v2.0
Ccdc110
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39846,387,656 - 46,398,643 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl846,387,656 - 46,397,182 (+)EnsemblGRCm39 Ensembl
GRCm38845,934,619 - 45,945,606 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl845,934,619 - 45,944,145 (+)EnsemblGRCm38mm10GRCm38
MGSCv37847,020,003 - 47,029,499 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36847,433,466 - 47,442,962 (+)NCBIMGSCv36mm8
Celera848,617,570 - 48,627,073 (+)NCBICelera
Cytogenetic Map8B1.1NCBI
cM Map825.92NCBI
Ccdc110
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81653,048,305 - 53,069,606 (-)NCBIGRCr8
mRatBN7.21646,315,745 - 46,337,050 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1646,315,745 - 46,337,021 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01649,509,885 - 49,522,094 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1647,151,520 - 47,163,898 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1649,509,876 - 49,522,341 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01649,236,399 - 49,256,913 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41649,597,036 - 49,610,956 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1644,314,008 - 44,334,950 (-)NCBICelera
Cytogenetic Map16q11NCBI
Ccdc110
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540323,593,235 - 23,619,838 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540323,593,610 - 23,616,959 (+)NCBIChiLan1.0ChiLan1.0
CCDC110
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23183,180,123 - 183,211,362 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14183,528,472 - 183,555,290 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04177,608,169 - 177,634,974 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14189,824,259 - 189,850,789 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4189,824,586 - 189,850,715 (-)Ensemblpanpan1.1panPan2
CCDC110
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11645,158,092 - 45,180,280 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1645,159,502 - 45,193,767 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1645,644,502 - 45,665,563 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01647,372,722 - 47,393,801 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1647,372,776 - 47,409,710 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11645,340,749 - 45,361,812 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01645,953,177 - 45,974,216 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01646,084,958 - 46,105,931 (+)NCBIUU_Cfam_GSD_1.0
Ccdc110
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494334,202,070 - 34,220,385 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365543,889,680 - 3,903,338 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365543,889,921 - 3,903,338 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC110
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1546,491,805 - 46,546,501 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11546,494,535 - 46,503,676 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21553,276,160 - 53,285,276 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC110
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17131,395,027 - 131,421,396 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037111,656,728 - 111,683,365 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021265001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01049096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000010632   ⟹   ENSHGLP00000010515
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476916,310,048 - 16,328,789 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000010633   ⟹   ENSHGLP00000010516
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476916,310,048 - 16,328,789 (-)Ensembl
RefSeq Acc Id: XM_021265001   ⟹   XP_021120660
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476916,309,257 - 16,329,154 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021120660 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021120660   ⟸   XM_021265001
- UniProtKB: G5B2W3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000010516   ⟸   ENSHGLT00000010633
Ensembl Acc Id: ENSHGLP00000010515   ⟸   ENSHGLT00000010632


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007542 Ensembl
NCBI Gene Ccdc110 ENTREZGENE
PANTHER CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED UniProtKB/TrEMBL
  COILED-COIL DOMAIN-CONTAINING PROTEIN 110 UniProtKB/TrEMBL
UniProt G5B2W3 ENTREZGENE, UniProtKB/TrEMBL