Elspbp1 (epididymal sperm binding protein 1) - Rat Genome Database

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Gene: Elspbp1 (epididymal sperm binding protein 1) Heterocephalus glaber
Analyze
Symbol: Elspbp1
Name: epididymal sperm binding protein 1
RGD ID: 18909704
Description: ENCODES a protein that exhibits heparin binding (inferred); INVOLVED IN sperm capacitation (inferred); FOUND IN cell surface (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: epididymal sperm-binding protein 1
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248325,770,992 - 5,792,905 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Elspbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248325,770,992 - 5,792,905 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ELSPBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,994,632 - 48,025,154 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,994,632 - 48,025,154 (+)EnsemblGRCh38hg38GRCh38
GRCh371948,497,889 - 48,528,411 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,189,743 - 53,220,217 (+)NCBINCBI36Build 36hg18NCBI36
Build 341953,189,742 - 53,220,217NCBI
Cytogenetic Map19q13.33NCBI
HuRef1944,879,959 - 44,910,292 (+)NCBIHuRef
CHM1_11948,499,819 - 48,530,347 (+)NCBICHM1_1
T2T-CHM13v2.01950,986,959 - 51,017,515 (+)NCBIT2T-CHM13v2.0
Elspbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955609229,332 - 241,987 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955609227,424 - 241,987 (-)NCBIChiLan1.0ChiLan1.0
ELSPBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22054,110,726 - 54,124,371 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11955,980,611 - 55,994,256 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01944,950,665 - 44,964,314 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11953,601,043 - 53,614,713 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1953,601,043 - 53,614,713 (+)Ensemblpanpan1.1panPan2
ELSPBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,159,609 - 108,187,224 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1108,159,611 - 108,188,076 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,642,613 - 107,669,907 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01108,685,570 - 108,713,065 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1108,685,572 - 108,713,154 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11108,330,509 - 108,357,988 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,998,546 - 108,025,876 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,866,432 - 108,893,760 (-)NCBIUU_Cfam_GSD_1.0
ELSPBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,583,965 - 53,603,366 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,583,965 - 53,603,746 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,168,387 - 49,187,813 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELSPBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,251,829 - 41,273,841 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl641,258,674 - 41,272,077 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607321,034,140 - 21,057,407 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: XM_013066304   ⟹   XP_012921758
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248325,770,992 - 5,792,905 (-)NCBI
RefSeq Acc Id: XM_013066306   ⟹   XP_012921760
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248325,770,992 - 5,792,905 (-)NCBI
RefSeq Acc Id: XM_021246037   ⟹   XP_021101696
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248325,770,992 - 5,781,336 (-)NCBI
RefSeq Acc Id: XR_001182451
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248325,770,992 - 5,792,905 (-)NCBI
RefSeq Acc Id: XR_002389883
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248325,770,992 - 5,792,905 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012921758 (Get FASTA)   NCBI Sequence Viewer  
  XP_012921760 (Get FASTA)   NCBI Sequence Viewer  
  XP_021101696 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012921760   ⟸   XM_013066306
- UniProtKB: G5B897 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012921758   ⟸   XM_013066304
- UniProtKB: G5B897 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101696   ⟸   XM_021246037
- UniProtKB: G5B897 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH Fibronectin, type II, collagen-binding UniProtKB/TrEMBL
InterPro FN_type2_dom UniProtKB/TrEMBL
  FN_type2_sf UniProtKB/TrEMBL
  Kringle-like UniProtKB/TrEMBL
NCBI Gene Elspbp1 ENTREZGENE
PANTHER EPIDIDYMAL SPERM-BINDING PROTEIN 1 UniProtKB/TrEMBL
  SEMINAL PLASMA PROTEIN UniProtKB/TrEMBL
Pfam fn2 UniProtKB/TrEMBL
PRINTS FNTYPEII UniProtKB/TrEMBL
PROSITE FN2_2 UniProtKB/TrEMBL
SMART FN2 UniProtKB/TrEMBL
Superfamily-SCOP Kringle-like UniProtKB/TrEMBL
UniProt G5B897 ENTREZGENE, UniProtKB/TrEMBL