ELSPBP1 (epididymal sperm binding protein 1)

Gene: ELSPBP1 (epididymal sperm binding protein 1) Chlorocebus sabaeus

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Symbol:

ELSPBP1

Name:

epididymal sperm binding protein 1

RGD ID:

18597627

Description:

ENCODES a protein that exhibits heparin binding (inferred); INVOLVED IN sperm capacitation (inferred); FOUND IN cell surface (inferred); extracellular region (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

epididymal sperm-binding protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	41,251,829 - 41,273,841 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	41,258,674 - 41,272,077 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	21,034,140 - 21,057,407 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

sperm capacitation (IEA)

Cellular Component

cell surface (IEA)

extracellular region (IEA)

Molecular Function

heparin binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

ELSPBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	41,251,829 - 41,273,841 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	41,258,674 - 41,272,077 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	21,034,140 - 21,057,407 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

ELSPBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	47,994,632 - 48,025,154 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	47,994,632 - 48,025,154 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	48,497,889 - 48,528,411 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	53,189,743 - 53,220,217 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	53,189,742 - 53,220,217	NCBI
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	44,879,959 - 44,910,292 (+)	NCBI		HuRef
CHM1_1	19	48,499,819 - 48,530,347 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	50,986,959 - 51,017,515 (+)	NCBI		T2T-CHM13v2.0

Elspbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955609	229,332 - 241,987 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955609	227,424 - 241,987 (-)	NCBI	ChiLan1.0	ChiLan1.0

ELSPBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	54,110,726 - 54,124,371 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	55,980,611 - 55,994,256 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	44,950,665 - 44,964,314 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	53,601,043 - 53,614,713 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	53,601,043 - 53,614,713 (+)	Ensembl	panpan1.1		panPan2

ELSPBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	108,159,609 - 108,187,224 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	108,159,611 - 108,188,076 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	107,642,613 - 107,669,907 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	108,685,570 - 108,713,065 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	108,685,572 - 108,713,154 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	108,330,509 - 108,357,988 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	107,998,546 - 108,025,876 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	108,866,432 - 108,893,760 (-)	NCBI		UU_Cfam_GSD_1.0

ELSPBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	53,583,965 - 53,603,366 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	53,583,965 - 53,603,746 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	49,168,387 - 49,187,813 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Elspbp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624832	5,770,992 - 5,792,905 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low	20	12	28
Below cutoff	12	6	29

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007997378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007997380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000000937 ⟹ ENSCSAP00000015128

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	6	41,258,674 - 41,272,077 (+)	Ensembl

RefSeq Acc Id:

XM_007997378 ⟹ XP_007995569

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	6	41,258,463 - 41,273,841 (+)	NCBI
Vero_WHO_p1.0	NW_023666073	21,042,267 - 21,057,407 (+)	NCBI

Sequence:

show sequence

TCTGGCTTTAAGCGATCCTCTGCCTTGGTCTCCCGAAGTGCTGAGATTACAGGTGTGAGCCACT
ATGCCTGGTCTATTTTTTAAATTACTGTGGATAGAAAGAAAAATGGCATGTATGATGTCAAATC
TAGGAGCTAGTGGGAAGAGGAAGGGGAACTGTGGGATGAAAATTTTTGTCTTCTTTCATTCCAG
AGAGAAGAGGGCAGCCAAGATGACCCGATGGTCCAGTTATCTGTTGGGATGGACGACCTTCCTT
CTCTGTTCCTATGAGTCAAGTGGAGGGATGCAAGAGGAATGTGTCTTTCCTTTCACCTACAAGG
GATCTGTTTACTTCACTTGCACCAAAATGCATAGCTTATCCCCTTGGTGTGCCACCAGAGCGGT
GTACAATGGCCAATGGAAGTACTGCCAGAGTGAAGATTACCCACGCTGTATCTTCCCTTTCATC
TATCGAGGAAAGGCCTATAACAGCTGCATCTCCCAGGGCAGCTTCTTAGGCAGTCTGTGGTGCT
CGGTCACCTCTGTCTTCGATGAGAAACAGCAGTGGAAATTCTGTGAAATGAATGAGTATGGGGG
AAATTCTCTCAGCAAGCCCTGCATCTTCCCCTCCATCTACAGAAACAACGTGGTCTCCGATTGC
CTGGAGGATGAAAGCAACAAGCTCTGGTGCCCGACCACAGAGAACATGGATAAGGATGGAAAGT
GGAGTTTCTGTGCCGACACCAGAATTTCCGCAGTGGTCCCTGGCTTTCCTTGCCACTTTCCATT
CAACTATAAAAACAAGAATTATTTTAACTGCACTAACAAAGGATCCAAGGAGAATCTTGTGTGG
TGTGCAACTTCTTACAACTACGACCAGGACCACACCTGGGTGTACTGCTGATGCTGAGGAGAGG
AGAAACATCTTCAGAGAAGGACCGCCATATTGAGGCTGAGCACGGATTCGTCTTTCTCATTGCT
TTTTCAAGCTTAGGTAAGCACCTTTAGAAATACCCTCTGCACTACCTGGTTCGATCAGCTGGTC
CTTTGTGAAGAACGTAGAGAGAATGCGGCATAACCACCAATAAAGGAGACTTGATTTAACCC

hide sequence

RefSeq Acc Id:

XM_007997380 ⟹ XP_007995571

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	6	41,251,829 - 41,273,841 (+)	NCBI
Vero_WHO_p1.0	NW_023666073	21,034,140 - 21,057,407 (+)	NCBI

Sequence:

show sequence

TTGCACTCCAGCCGGGGCAACAGAGCAAGATTCTGTCTCAAAAAGAAAAAGAAAAGAAAAGAAA
AGAAAAGAAAATTCTAGGGTTCTCTTTCATTGTTCAGCCGAAACCTCTCCAGCAATGCATAACT
GAATTTCTGGGAACATTCCCTCCTCTGTTCATTAATATTCTTGTCCCTGACCCCAGCCCCCGCA
AAGCCCCGTCCATGTACACTTGACTGAATTTTATGGGCTTCGTGGATATGCATGGGCTTATCTC
GAGGCATCATAAATTAACCACAGCTGATCTCATCCAAACTGTCTTCGGACAGTAACCACTGATG
AAGAGCCCTCCTTTGAGAAGCTGCCATTGTGTCCTACAGACAGGCTGGAGCCAAAGCCATTCAA
CCAATCCCCAGACAATCCAGAGCTCTTGGGAGCAGAACCGTAAAGAGAGATCGTGGAGAGAGCT
AGGGCCCAGAAGAACTCTCTCAAAGAGAGAAGAGGGCAGCCAAGATGACCCGATGGTCCAGTTA
TCTGTTGGGATGGACGACCTTCCTTCTCTGTTCCTATGAGTCAAGTGGAGGGATGCAAGAGGAA
TGTGTCTTTCCTTTCACCTACAAGGGATCTGTTTACTTCACTTGCACCAAAATGCATAGCTTAT
CCCCTTGGTGTGCCACCAGAGCGGTGTACAATGGCCAATGGAAGTACTGCCAGAGTGAAGATTA
CCCACGCTGTATCTTCCCTTTCATCTATCGAGGAAAGGCCTATAACAGCTGCATCTCCCAGGGC
AGCTTCTTAGGCAGTCTGTGGTGCTCGGTCACCTCTGTCTTCGATGAGAAACAGCAGTGGAAAT
TCTGTGAAATGAATGAGTATGGGGGAAATTCTCTCAGCAAGCCCTGCATCTTCCCCTCCATCTA
CAGAAACAACGTGGTCTCCGATTGCCTGGAGGATGAAAGCAACAAGCTCTGGTGCCCGACCACA
GAGAACATGGATAAGGATGGAAAGTGGAGTTTCTGTGCCGACACCAGAATTTCCGCAGTGGTCC
CTGGCTTTCCTTGCCACTTTCCATTCAACTATAAAAACAAGAATTATTTTAACTGCACTAACAA
AGGATCCAAGGAGAATCTTGTGTGGTGTGCAACTTCTTACAACTACGACCAGGACCACACCTGG
GTGTACTGCTGATGCTGAGGAGAGGAGAAACATCTTCAGAGAAGGACCGCCATATTGAGGCTGA
GCACGGATTCGTCTTTCTCATTGCTTTTTCAAGCTTAGGTAAGCACCTTTAGAAATACCCTCTG
CACTACCTGGTTCGATCAGCTGGTCCTTTGTGAAGAACGTAGAGAGAATGCGGCATAACCACCA
ATAAAGGAGACTTGATTTAACCC

hide sequence

Protein Sequences


Protein RefSeqs	XP_007995569	(Get FASTA)	NCBI Sequence Viewer
	XP_007995571	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000015128
	ENSCSAP00000015128.1

RefSeq Acc Id:	XP_007995571 ⟸ XM_007997380
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9S2N9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007995569 ⟸ XM_007997378
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S2N9 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000015128 ⟸ ENSCSAT00000000937

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000002911	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000000937.1	UniProtKB/TrEMBL
Gene3D-CATH	2.10.10.10	UniProtKB/TrEMBL
InterPro	FN_type2_dom	UniProtKB/TrEMBL
	FN_type2_sf	UniProtKB/TrEMBL
	Kringle-like	UniProtKB/TrEMBL
NCBI Gene	ELSPBP1	ENTREZGENE
PANTHER	EPIDIDYMAL SPERM-BINDING PROTEIN 1	UniProtKB/TrEMBL
	SEMINAL PLASMA PROTEIN	UniProtKB/TrEMBL
Pfam	fn2	UniProtKB/TrEMBL
PRINTS	FNTYPEII	UniProtKB/TrEMBL
PROSITE	FN2_1	UniProtKB/TrEMBL
	FN2_2	UniProtKB/TrEMBL
SMART	FN2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57440	UniProtKB/TrEMBL
UniProt	A0A0D9S2N9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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