Ap5b1 (adaptor related protein complex 5 subunit beta 1) - Rat Genome Database

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Gene: Ap5b1 (adaptor related protein complex 5 subunit beta 1) Heterocephalus glaber
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Symbol: Ap5b1
Name: adaptor related protein complex 5 subunit beta 1
RGD ID: 18909650
Description: INVOLVED IN endosomal transport (inferred); protein transport (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog); FOUND IN AP-type membrane coat adaptor complex (inferred); lysosomal membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adaptor related protein complex 5 beta 1 subunit; AP-5 complex subunit beta-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,644,205 - 20,647,756 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,644,230 - 20,647,520 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Ap5b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,644,205 - 20,647,756 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,644,230 - 20,647,520 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
AP5B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,773,898 - 65,780,976 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,773,898 - 65,780,976 (-)EnsemblGRCh38hg38GRCh38
GRCh371165,541,369 - 65,548,447 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,299,949 - 65,304,398 (-)NCBINCBI36Build 36hg18NCBI36
Celera1162,868,693 - 62,872,853 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,868,700 - 61,875,393 (-)NCBIHuRef
CHM1_11165,425,263 - 65,431,956 (-)NCBICHM1_1
T2T-CHM13v2.01165,768,361 - 65,775,439 (-)NCBIT2T-CHM13v2.0
Ap5b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,610,278 - 5,621,290 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,618,053 - 5,621,289 (+)EnsemblGRCm39 Ensembl
GRCm38195,560,250 - 5,571,262 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,568,025 - 5,571,261 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,568,074 - 5,571,261 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,568,074 - 5,571,261 (+)NCBIMGSCv36mm8
Celera195,439,296 - 5,442,483 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Ap5b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,305,612 - 212,309,643 (+)NCBIGRCr8
mRatBN7.21202,876,272 - 202,880,303 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,876,272 - 202,880,289 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,228,560 - 211,232,590 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,321,674 - 218,325,705 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,012,727 - 211,016,758 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,948,318 - 220,952,349 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,948,331 - 220,952,391 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,878,404 - 227,882,435 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,214,415 - 208,217,238 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1200,412,033 - 200,416,064 (+)NCBICelera
Cytogenetic Map1q43NCBI
Ap5b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,544,344 - 19,547,429 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,544,255 - 19,547,212 (+)NCBIChiLan1.0ChiLan1.0
AP5B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,006,327 - 67,009,981 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,030,270 - 68,052,754 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,132,012 - 61,139,078 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,469,111 - 64,471,623 (-)NCBIpanpan1.1PanPan1.1panPan2
AP5B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,472,966 - 51,476,231 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,462,758 - 51,476,114 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,071,848 - 50,084,742 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,501,168 - 52,514,077 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,510,846 - 52,514,511 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,600,976 - 51,613,870 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,175,612 - 51,188,511 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,964,779 - 51,977,682 (+)NCBIUU_Cfam_GSD_1.0
Ap5b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,308,173 - 7,311,253 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,750,512 - 3,754,291 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,750,553 - 3,753,601 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AP5B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,547,998 - 6,553,761 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,538,784 - 6,551,337 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,652,029 - 5,655,379 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AP5B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,484,076 - 8,487,635 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,484,328 - 8,487,402 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,771,496 - 105,778,878 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000020329   ⟹   ENSHGLP00000020128
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476720,644,205 - 20,647,756 (+)Ensembl
RefSeq Acc Id: XM_004852376   ⟹   XP_004852433
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476720,644,230 - 20,647,520 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004852433 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04869 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020128
  ENSHGLP00100024747
GenBank Protein JAN96587 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004852433   ⟸   XM_004852376
- UniProtKB: G5B6J2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000020128   ⟸   ENSHGLT00000020329


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014408 Ensembl, ENTREZGENE
  ENSHGLG00100018174 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000020329 ENTREZGENE
  ENSHGLT00100025002 UniProtKB/TrEMBL
InterPro AP5B1 UniProtKB/TrEMBL
  AP5B1_barrel UniProtKB/TrEMBL
  AP5B1_C UniProtKB/TrEMBL
  AP5B1_middle UniProtKB/TrEMBL
  AP5B1_N UniProtKB/TrEMBL
KEGG Report hgl:101714752 UniProtKB/TrEMBL
NCBI Gene Ap5b1 ENTREZGENE
PANTHER AP-5 COMPLEX SUBUNIT BETA-1 UniProtKB/TrEMBL
  PTHR34033 UniProtKB/TrEMBL
Pfam AP5B1_barrel UniProtKB/TrEMBL
  AP5B1_C UniProtKB/TrEMBL
  AP5B1_middle UniProtKB/TrEMBL
  AP5B1_N UniProtKB/TrEMBL
UniProt G5B6J2 ENTREZGENE, UniProtKB/TrEMBL