LOC101720535 (histone H2A.J) - Rat Genome Database

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Gene: LOC101720535 (histone H2A.J) Heterocephalus glaber
Analyze
Symbol: LOC101720535 (Ensembl: H2AFJ)
Name: histone H2A.J
RGD ID: 18909485
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); FOUND IN chromosome (inferred); nucleosome (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: H2AFJ; Histone H2A type 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475223,246,383 - 23,246,772 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475223,246,253 - 23,246,912 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
nucleosome  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101720535
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475223,246,383 - 23,246,772 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475223,246,253 - 23,246,912 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
H2AJ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381214,774,405 - 14,778,002 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1214,774,405 - 14,778,002 (+)EnsemblGRCh38hg38GRCh38
GRCh371214,927,339 - 14,930,936 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,818,537 - 14,822,203 (+)NCBINCBI36Build 36hg18NCBI36
Build 341214,818,561 - 14,822,201NCBI
Celera1220,072,245 - 20,075,911 (+)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1214,696,539 - 14,700,205 (+)NCBIHuRef
CHM1_11214,893,363 - 14,897,029 (+)NCBICHM1_1
T2T-CHM13v2.01214,651,754 - 14,655,351 (+)NCBIT2T-CHM13v2.0
H2aj
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396136,785,246 - 136,787,072 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6136,785,242 - 136,787,072 (+)EnsemblGRCm39 Ensembl
GRCm386136,808,248 - 136,810,074 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6136,808,244 - 136,810,074 (+)EnsemblGRCm38mm10GRCm38
MGSCv376136,756,769 - 136,758,595 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366136,772,520 - 136,774,270 (+)NCBIMGSCv36mm8
MGSCv366137,174,895 - 137,176,645 (+)NCBIMGSCv36mm8
Celera6139,817,503 - 139,819,331 (+)NCBICelera
Cytogenetic Map6G1NCBI
cM Map666.72NCBI
H2aj
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,406,922 - 171,407,406 (+)NCBIGRCr8
mRatBN7.24169,675,718 - 169,676,202 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,675,752 - 169,677,006 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4175,970,446 - 175,970,930 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,752,185 - 171,752,669 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,376,110 - 170,376,594 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,766,900 - 170,767,384 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,766,900 - 170,767,382 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,149,029 - 170,149,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04234,409,181 - 234,409,665 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44173,818,670 - 173,819,154 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4158,259,247 - 158,259,731 (+)NCBICelera
Cytogenetic Map4q43NCBI
LOC102027285
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541311,520,610 - 11,520,999 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541311,520,479 - 11,521,163 (+)NCBIChiLan1.0ChiLan1.0
LOC100976242
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21020,224,247 - 20,226,929 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,222,619 - 20,223,690 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01214,780,257 - 14,781,331 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11215,177,159 - 15,178,239 (+)NCBIpanpan1.1PanPan1.1panPan2
H2AJ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12731,835,433 - 31,836,150 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2731,835,623 - 31,836,012 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2714,612,886 - 14,613,592 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02732,142,187 - 32,142,896 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2732,142,377 - 32,142,766 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12732,031,419 - 32,032,127 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02731,990,164 - 31,990,874 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02714,344,929 - 14,345,636 (+)NCBIUU_Cfam_GSD_1.0
LOC101977852
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494592,971,534 - 92,972,197 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365872,699,169 - 2,699,845 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H2AJ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl557,777,010 - 57,777,654 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1557,777,008 - 57,777,673 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2561,247,573 - 61,248,074 (+)NCBISscrofa10.2Sscrofa10.2susScr3
H2AFJ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,673,850 - 14,674,530 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,673,924 - 14,674,476 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606920,634,660 - 20,636,384 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000029573   ⟹   ENSHGLP00000028939
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475223,246,383 - 23,246,772 (-)Ensembl
RefSeq Acc Id: XM_004845834   ⟹   XP_004845891
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475223,246,253 - 23,246,912 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004845891 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13167 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028939
  ENSHGLP00100045928
GenBank Protein JAN97908 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004845891   ⟸   XM_004845834
- UniProtKB: A0A0P6J3E9 (UniProtKB/TrEMBL),   G5BQE2 (UniProtKB/TrEMBL),   G5BV53 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000028939   ⟸   ENSHGLT00000029573


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000021363 Ensembl, ENTREZGENE
  ENSHGLG00100052090 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000029573 ENTREZGENE
  ENSHGLT00100064214 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
  Histone_H2A_CS UniProtKB/TrEMBL
KEGG Report hgl:101720535 UniProtKB/TrEMBL
NCBI Gene LOC101720535 ENTREZGENE
PANTHER HISTONE H2A.J UniProtKB/TrEMBL
  PTHR23430 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
PRINTS HISTONEH2A UniProtKB/TrEMBL
PROSITE HISTONE_H2A UniProtKB/TrEMBL
SMART H2A UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A0P6J3E9 ENTREZGENE, UniProtKB/TrEMBL
  G5BQE2 ENTREZGENE, UniProtKB/TrEMBL
  G5BV53 ENTREZGENE, UniProtKB/TrEMBL