Symbol:
LOC101720535 (Ensembl: H2AFJ)
Name:
histone H2A.J
RGD ID:
18909485
Description:
ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); FOUND IN chromosome (inferred); nucleosome (inferred); nucleus (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
H2AFJ; Histone H2A type 1
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
JBrowse:
View Region in Genome Browser (JBrowse)
Model
LOC101720535
H2AJ Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 12 14,774,405 - 14,778,002 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 12 14,774,405 - 14,778,002 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 12 14,927,339 - 14,930,936 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 12 14,818,537 - 14,822,203 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 12 14,818,561 - 14,822,201 NCBI Celera 12 20,072,245 - 20,075,911 (+) NCBI Celera Cytogenetic Map 12 p12.3 NCBI HuRef 12 14,696,539 - 14,700,205 (+) NCBI HuRef CHM1_1 12 14,893,363 - 14,897,029 (+) NCBI CHM1_1 T2T-CHM13v2.0 12 14,651,754 - 14,655,351 (+) NCBI T2T-CHM13v2.0
H2aj Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 6 136,785,246 - 136,787,072 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 6 136,785,242 - 136,787,072 (+) Ensembl GRCm39 Ensembl GRCm38 6 136,808,248 - 136,810,074 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 6 136,808,244 - 136,810,074 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 6 136,756,769 - 136,758,595 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 6 136,772,520 - 136,774,270 (+) NCBI MGSCv36 mm8 MGSCv36 6 137,174,895 - 137,176,645 (+) NCBI MGSCv36 mm8 Celera 6 139,817,503 - 139,819,331 (+) NCBI Celera Cytogenetic Map 6 G1 NCBI cM Map 6 66.72 NCBI
H2aj Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 4 171,406,922 - 171,407,406 (+) NCBI GRCr8 mRatBN7.2 4 169,675,718 - 169,676,202 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 4 169,675,752 - 169,677,006 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 4 175,970,446 - 175,970,930 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 4 171,752,185 - 171,752,669 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 4 170,376,110 - 170,376,594 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 4 170,766,900 - 170,767,384 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 4 170,766,900 - 170,767,382 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 4 170,149,029 - 170,149,418 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 4 234,409,181 - 234,409,665 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 4 173,818,670 - 173,819,154 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 4 158,259,247 - 158,259,731 (+) NCBI Celera Cytogenetic Map 4 q43 NCBI
LOC102027285 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955413 11,520,610 - 11,520,999 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955413 11,520,479 - 11,521,163 (+) NCBI ChiLan1.0 ChiLan1.0
LOC100976242 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 10 20,224,247 - 20,226,929 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 12 20,222,619 - 20,223,690 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 12 14,780,257 - 14,781,331 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 12 15,177,159 - 15,178,239 (+) NCBI panpan1.1 PanPan1.1 panPan2
H2AJ Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 27 31,835,433 - 31,836,150 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 27 31,835,623 - 31,836,012 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 27 14,612,886 - 14,613,592 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 27 32,142,187 - 32,142,896 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 27 32,142,377 - 32,142,766 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 27 32,031,419 - 32,032,127 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 27 31,990,164 - 31,990,874 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 27 14,344,929 - 14,345,636 (+) NCBI UU_Cfam_GSD_1.0
LOC101977852
H2AJ Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 5 57,777,010 - 57,777,654 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 5 57,777,008 - 57,777,673 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 5 61,247,573 - 61,248,074 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
H2AFJ Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 11 14,673,850 - 14,674,530 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 11 14,673,924 - 14,674,476 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666069 20,634,660 - 20,636,384 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSHGLT00000029573 ⟹ ENSHGLP00000028939
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624752 23,246,383 - 23,246,772 (-) Ensembl
RefSeq Acc Id:
XM_004845834 ⟹ XP_004845891
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624752 23,246,253 - 23,246,912 (-) NCBI
RefSeq Acc Id:
XP_004845891 ⟸ XM_004845834
- UniProtKB:
A0A0P6J3E9 (UniProtKB/TrEMBL), G5BQE2 (UniProtKB/TrEMBL), G5BV53 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSHGLP00000028939 ⟸ ENSHGLT00000029573
