LOC101710920 (E3 ubiquitin-protein ligase TRIM38) - Rat Genome Database

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Gene: LOC101710920 (E3 ubiquitin-protein ligase TRIM38) Heterocephalus glaber
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Symbol: LOC101710920
Name: E3 ubiquitin-protein ligase TRIM38
RGD ID: 18909358
Description: ENCODES a protein that exhibits metal ion binding (inferred); protein homodimerization activity (inferred); protein kinase binding (inferred); INVOLVED IN positive regulation of autophagy (inferred); positive regulation of canonical NF-kappaB signal transduction (inferred); protein polyubiquitination (inferred); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Trim38; tripartite motif containing 38; Tripartite motif-containing protein 38
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624756969,589 - 984,853 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
nucleoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021260514   ⟹   XP_021116173
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624756969,589 - 984,853 (+)NCBI
RefSeq Acc Id: XM_021260515   ⟹   XP_021116174
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624756969,589 - 984,853 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021116173 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116174 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB15034 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012924
Reference Protein Sequences
RefSeq Acc Id: XP_021116173   ⟸   XM_021260514
- UniProtKB: A0A0P6J4A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116174   ⟸   XM_021260515
- UniProtKB: A0A0P6J4A6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009241 ENTREZGENE
Ensembl Transcript ENSHGLT00000013061 ENTREZGENE
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
  Zinc/RING finger domain, C3HC4 (zinc finger) UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY/PRY_TRIM38 UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_C3HC4_RING-type UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report hgl:101710920 UniProtKB/TrEMBL
NCBI Gene LOC101710920 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE TRIM38 UniProtKB/TrEMBL
Pfam PRY UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
  zf-C3HC4 UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  Concanavalin A-like lectins/glucanases UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
UniProt A0A0P6J4A6 ENTREZGENE, UniProtKB/TrEMBL