Tomm34 (translocase of outer mitochondrial membrane 34) - Rat Genome Database

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Gene: Tomm34 (translocase of outer mitochondrial membrane 34) Heterocephalus glaber
Analyze
Symbol: Tomm34
Name: translocase of outer mitochondrial membrane 34
RGD ID: 18909316
Description: ENCODES a protein that exhibits heat shock protein binding (inferred); INVOLVED IN protein targeting to mitochondrion (inferred); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); mitochondrial outer membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial import receptor subunit TOM34
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247909,523,111 - 9,543,154 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247909,523,612 - 9,542,475 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tomm34
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247909,523,111 - 9,543,154 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247909,523,612 - 9,542,475 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TOMM34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382044,942,130 - 44,960,397 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2044,942,130 - 44,960,397 (-)EnsemblGRCh38hg38GRCh38
GRCh372043,570,771 - 43,589,038 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362043,004,185 - 43,022,528 (-)NCBINCBI36Build 36hg18NCBI36
Build 342043,004,185 - 43,022,528NCBI
Celera2040,279,403 - 40,297,749 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2040,312,450 - 40,330,813 (-)NCBIHuRef
CHM1_12043,473,552 - 43,491,894 (-)NCBICHM1_1
T2T-CHM13v2.02046,677,999 - 46,696,286 (-)NCBIT2T-CHM13v2.0
Tomm34
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392163,895,458 - 163,913,168 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2163,895,460 - 163,913,089 (-)EnsemblGRCm39 Ensembl
GRCm382164,053,538 - 164,071,178 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,053,540 - 164,071,169 (-)EnsemblGRCm38mm10GRCm38
MGSCv372163,879,277 - 163,896,838 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362163,744,982 - 163,762,543 (-)NCBIMGSCv36mm8
Celera2169,983,600 - 170,001,123 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map284.6NCBI
Tomm34
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83173,148,737 - 173,165,689 (-)NCBIGRCr8
mRatBN7.23152,729,345 - 152,746,295 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3152,729,349 - 152,746,373 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3156,536,783 - 156,553,629 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,035,719 - 165,052,565 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03162,779,795 - 162,796,297 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03160,448,294 - 160,465,143 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3160,448,298 - 160,465,143 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03166,632,890 - 166,649,736 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43154,995,686 - 155,012,532 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13154,902,556 - 154,918,161 (-)NCBI
Celera3151,378,081 - 151,394,725 (-)NCBICelera
Cytogenetic Map3q42NCBI
Tomm34
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544512,401,285 - 12,419,607 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544512,401,348 - 12,420,548 (+)NCBIChiLan1.0ChiLan1.0
TOMM34
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22150,675,414 - 50,693,653 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12050,668,521 - 50,686,760 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02041,272,876 - 41,291,097 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12042,365,325 - 42,383,639 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2042,365,325 - 42,383,639 (-)Ensemblpanpan1.1panPan2
TOMM34
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12432,351,015 - 32,368,744 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2432,351,097 - 32,376,067 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2431,996,430 - 32,014,179 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02433,061,909 - 33,079,557 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2433,061,355 - 33,079,660 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12432,323,249 - 32,340,978 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02432,438,200 - 32,455,958 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02432,979,920 - 32,997,669 (-)NCBIUU_Cfam_GSD_1.0
Tomm34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640192,334,352 - 192,352,207 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365147,787,809 - 7,804,979 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365147,787,843 - 7,824,781 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TOMM34
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1747,352,160 - 47,376,503 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11747,352,144 - 47,376,571 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21752,848,363 - 52,901,380 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TOMM34
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1218,850,986 - 18,869,335 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl218,851,053 - 18,869,404 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605067,500,028 - 67,518,434 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000010017   ⟹   ENSHGLP00000009908
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247909,523,111 - 9,543,154 (+)Ensembl
RefSeq Acc Id: XM_004858175   ⟹   XP_004858232
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247909,523,612 - 9,542,475 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004858232 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009908
  ENSHGLP00100053631
GenBank Protein JAN98629 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004858232   ⟸   XM_004858175
- UniProtKB: A0A0N8ET95 (UniProtKB/TrEMBL),   G5BB28 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000009908   ⟸   ENSHGLT00000010017


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007105 Ensembl, ENTREZGENE
  ENSHGLG00100010663 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000010017 ENTREZGENE
  ENSHGLT00100060014 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro CiliaryAsmbly_MitoImport UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
KEGG Report hgl:101704036 UniProtKB/TrEMBL
NCBI Gene Tomm34 ENTREZGENE
PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM34 UniProtKB/TrEMBL
  RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOG UniProtKB/TrEMBL
Pfam TPR_1 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A0N8ET95 ENTREZGENE, UniProtKB/TrEMBL
  G5BB28 ENTREZGENE, UniProtKB/TrEMBL