Msantd4 (Myb/SANT DNA binding domain containing 4 with coiled-coils) - Rat Genome Database

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Gene: Msantd4 (Myb/SANT DNA binding domain containing 4 with coiled-coils) Heterocephalus glaber
Analyze
Symbol: Msantd4
Name: Myb/SANT DNA binding domain containing 4 with coiled-coils
RGD ID: 18908635
Description: ENCODES a protein that exhibits DNA binding (inferred); ASSOCIATED WITH ataxia telangiectasia (ortholog); chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myb/SANT-like DNA-binding domain-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624784804,925 - 817,122 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624784805,556 - 817,303 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Msantd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624784804,925 - 817,122 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624784805,556 - 817,303 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MSANTD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811106,007,899 - 106,022,287 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11105,995,623 - 106,022,403 (-)EnsemblGRCh38hg38GRCh38
GRCh3711105,878,626 - 105,893,014 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611105,383,839 - 105,398,164 (-)NCBINCBI36Build 36hg18NCBI36
Celera11103,042,885 - 103,057,210 (-)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11101,809,702 - 101,824,027 (-)NCBIHuRef
CHM1_111105,761,601 - 105,775,928 (-)NCBICHM1_1
T2T-CHM13v2.011106,012,491 - 106,026,880 (-)NCBIT2T-CHM13v2.0
Msantd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3994,376,552 - 4,386,890 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl94,376,562 - 4,386,870 (+)EnsemblGRCm39 Ensembl
GRCm3894,376,552 - 4,386,890 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl94,376,562 - 4,386,870 (+)EnsemblGRCm38mm10GRCm38
MGSCv3794,383,535 - 4,386,870 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3694,376,612 - 4,386,870 (+)NCBIMGSCv36mm8
Celera3118,318,018 - 118,321,353 (-)NCBICelera
Cytogenetic Map9A1NCBI
cM Map92.46NCBI
Msantd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr889,801,921 - 9,812,529 (+)NCBIGRCr8
mRatBN7.281,516,979 - 1,527,587 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl81,516,979 - 1,527,587 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx85,504,431 - 5,515,046 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.083,802,169 - 3,812,784 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.081,748,297 - 1,758,904 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.081,503,018 - 1,513,626 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl81,502,877 - 1,513,603 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.081,497,145 - 1,507,753 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48910,994 - 921,602 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera81,399,976 - 1,410,584 (+)NCBICelera
Cytogenetic Map8q11NCBI
Msantd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554128,652,193 - 8,666,347 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554128,654,182 - 8,666,254 (-)NCBIChiLan1.0ChiLan1.0
MSANTD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29106,752,481 - 106,770,678 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111107,850,736 - 107,865,242 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011100,899,541 - 100,913,926 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111104,383,403 - 104,397,767 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11104,383,412 - 104,397,702 (-)Ensemblpanpan1.1panPan2
MSANTD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1526,251,313 - 26,257,984 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl526,251,180 - 26,256,237 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha526,176,538 - 26,183,204 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0526,279,946 - 26,286,603 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl526,280,594 - 26,284,853 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1526,330,319 - 26,336,996 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0526,215,732 - 26,222,402 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0526,365,353 - 26,372,025 (+)NCBIUU_Cfam_GSD_1.0
Msantd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494789,132,069 - 89,145,062 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365512,391,565 - 2,404,389 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365512,391,518 - 2,404,421 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MSANTD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl935,830,837 - 35,862,114 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1935,828,697 - 35,839,579 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2939,846,084 - 39,875,760 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MSANTD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1197,405,837 - 97,420,276 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl197,407,462 - 97,420,124 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604328,461,174 - 28,475,650 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000022078   ⟹   ENSHGLP00000021868
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624784804,925 - 817,122 (-)Ensembl
RefSeq Acc Id: XM_004856485   ⟹   XP_004856542
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624784805,556 - 816,862 (-)NCBI
RefSeq Acc Id: XM_004856486   ⟹   XP_004856543
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624784805,556 - 817,303 (-)NCBI
RefSeq Acc Id: XM_021237813   ⟹   XP_021093472
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624784805,556 - 817,103 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004856542 (Get FASTA)   NCBI Sequence Viewer  
  XP_004856543 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093472 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021868
GenBank Protein JAN96419 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004856543   ⟸   XM_004856486
- UniProtKB: A0A0P6IZV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093472   ⟸   XM_021237813
- UniProtKB: A0A0P6IZV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856542   ⟸   XM_004856485
- UniProtKB: A0A0P6IZV9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000021868   ⟸   ENSHGLT00000022078


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015607 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000022078 ENTREZGENE, UniProtKB/TrEMBL
InterPro MSANTD4 UniProtKB/TrEMBL
  Myb_DNA-bind_5 UniProtKB/TrEMBL
KEGG Report hgl:101700817 UniProtKB/TrEMBL
NCBI Gene Msantd4 ENTREZGENE
PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
  PTHR21732 UniProtKB/TrEMBL
Pfam Myb_DNA-bind_5 UniProtKB/TrEMBL
UniProt A0A0P6IZV9 ENTREZGENE, UniProtKB/TrEMBL