Dync1li1 (dynein cytoplasmic 1 light intermediate chain 1) - Rat Genome Database

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Gene: Dync1li1 (dynein cytoplasmic 1 light intermediate chain 1) Heterocephalus glaber
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Symbol: Dync1li1
Name: dynein cytoplasmic 1 light intermediate chain 1
RGD ID: 18908184
Description: ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to nerve growth factor stimulus (ortholog); early endosome to recycling endosome transport (ortholog); positive regulation of mitotic cell cycle spindle assembly checkpoint (ortholog); PARTICIPATES IN mitochondria transport pathway; FOUND IN centrosome (ortholog); endocytic vesicle membrane (ortholog); kinetochore (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Cytoplasmic dynein 1 light intermediate chain 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478810,593,940 - 10,625,052 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478810,593,647 - 10,624,755 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Dync1li1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478810,593,940 - 10,625,052 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478810,593,647 - 10,624,755 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DYNC1LI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,525,974 - 32,570,858 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl332,525,974 - 32,570,858 (-)EnsemblGRCh38hg38GRCh38
GRCh37332,567,466 - 32,612,350 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36332,542,470 - 32,587,346 (-)NCBINCBI36Build 36hg18NCBI36
Celera332,504,552 - 32,549,458 (-)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef332,502,312 - 32,547,668 (-)NCBIHuRef
CHM1_1332,517,445 - 32,562,297 (-)NCBICHM1_1
T2T-CHM13v2.0332,522,924 - 32,567,802 (-)NCBIT2T-CHM13v2.0
Dync1li1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,517,899 - 114,552,856 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,517,858 - 114,553,370 (+)EnsemblGRCm39 Ensembl
GRCm389114,688,831 - 114,723,788 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,688,790 - 114,724,302 (+)EnsemblGRCm38mm10GRCm38
MGSCv379114,597,949 - 114,632,906 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369114,537,529 - 114,572,486 (+)NCBIMGSCv36mm8
Celera9115,163,888 - 115,198,850 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map964.96NCBI
Dync1li1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,254,823 - 123,288,496 (+)NCBIGRCr8
mRatBN7.28114,376,649 - 114,410,297 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,376,662 - 114,410,934 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8119,993,673 - 120,027,564 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08118,192,922 - 118,226,802 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08116,035,754 - 116,069,647 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,743,274 - 122,776,801 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,743,189 - 122,776,806 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08122,055,383 - 122,088,910 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48119,103,884 - 119,137,411 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18119,123,620 - 119,157,148 (+)NCBI
Celera8113,623,555 - 113,657,074 (+)NCBICelera
Cytogenetic Map8q32NCBI
Dync1li1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495562046,556 - 82,595 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495562046,535 - 82,595 (-)NCBIChiLan1.0ChiLan1.0
DYNC1LI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2232,503,341 - 32,549,695 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1332,508,120 - 32,554,514 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0332,450,693 - 32,495,400 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1332,758,407 - 32,804,117 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl332,758,407 - 32,804,117 (-)Ensemblpanpan1.1panPan2
DYNC1LI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12312,235,539 - 12,283,851 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2312,235,104 - 12,277,031 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2312,210,519 - 12,258,652 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02312,526,271 - 12,574,477 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2312,525,836 - 12,568,653 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12312,328,096 - 12,376,225 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02312,437,857 - 12,517,703 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02312,474,796 - 12,522,987 (+)NCBIUU_Cfam_GSD_1.0
Dync1li1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118189,873,315 - 189,903,941 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647323,009,351 - 23,042,439 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647323,011,888 - 23,042,497 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYNC1LI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,506,194 - 18,558,007 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11318,507,710 - 18,558,057 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21320,309,319 - 20,330,876 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DYNC1LI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,025,416 - 77,073,958 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1577,026,235 - 77,073,859 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604150,380,599 - 50,431,820 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000002119   ⟹   ENSHGLP00000002071
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478810,593,940 - 10,625,052 (-)Ensembl
RefSeq Acc Id: XM_004857831   ⟹   XP_004857888
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478810,593,648 - 10,624,755 (-)NCBI
RefSeq Acc Id: XM_021238722   ⟹   XP_021094381
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478810,593,647 - 10,623,965 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004857888 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094381 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB09217 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002071
GenBank Protein JAO03567 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021094381   ⟸   XM_021238722
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JN59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857888   ⟸   XM_004857831
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JN59 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000002071   ⟸   ENSHGLT00000002119


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001574 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002119 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Dynein1_light_intermed_chain UniProtKB/TrEMBL
  Dynein_light_int_chain UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Dync1li1 ENTREZGENE
PANTHER CYTOPLASMIC DYNEIN 1 LIGHT INTERMEDIATE CHAIN 1 UniProtKB/TrEMBL
  PTHR12688 UniProtKB/TrEMBL
Pfam DLIC UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0P6JN59 ENTREZGENE, UniProtKB/TrEMBL