Slc7a6os (solute carrier family 7 member 6 opposite strand) - Rat Genome Database

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Gene: Slc7a6os (solute carrier family 7 member 6 opposite strand) Heterocephalus glaber
Analyze
Symbol: Slc7a6os
Name: solute carrier family 7 member 6 opposite strand
RGD ID: 18908001
Description: INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); Myoclonic Epilepsies (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable RNA polymerase II nuclear localization protein SLC7A6OS; Protein SLC7A6OS; putative RNA polymerase II nuclear localization protein SLC7A6OS
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,001,346 - 18,008,013 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,001,309 - 18,009,307 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Slc7a6os
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,001,346 - 18,008,013 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,001,309 - 18,009,307 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC7A6OS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381668,298,034 - 68,310,946 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1668,284,503 - 68,310,946 (-)EnsemblGRCh38hg38GRCh38
GRCh371668,331,937 - 68,344,849 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,892,021 - 66,902,349 (-)NCBINCBI36Build 36hg18NCBI36
Celera1652,843,026 - 52,853,373 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1654,207,680 - 54,218,045 (-)NCBIHuRef
CHM1_11669,742,543 - 69,752,889 (-)NCBICHM1_1
T2T-CHM13v2.01674,093,816 - 74,106,724 (-)NCBIT2T-CHM13v2.0
Slc7a6os
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,927,070 - 106,937,565 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,927,349 - 106,937,567 (-)EnsemblGRCm39 Ensembl
GRCm388106,200,438 - 106,210,933 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8106,200,717 - 106,210,935 (-)EnsemblGRCm38mm10GRCm38
MGSCv378108,724,338 - 108,734,833 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368109,089,843 - 109,101,252 (-)NCBIMGSCv36mm8
Celera8110,428,215 - 110,438,835 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.11NCBI
Slc7a6os
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,011,850 - 51,020,514 (-)NCBIGRCr8
mRatBN7.21934,101,978 - 34,110,666 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,101,982 - 34,110,651 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,917,547 - 40,926,211 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,570,860 - 41,579,524 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,870,004 - 43,878,668 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01938,180,859 - 38,189,523 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1938,180,861 - 38,189,523 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01949,047,659 - 49,056,771 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41936,051,094 - 36,059,755 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11936,055,976 - 36,064,201 (-)NCBI
Celera1933,529,063 - 33,537,727 (-)NCBICelera
Cytogenetic Map19q12NCBI
Slc7a6os
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554848,340,076 - 8,347,472 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554848,340,059 - 8,348,776 (+)NCBIChiLan1.0ChiLan1.0
SLC7A6OS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,830,105 - 77,857,662 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11683,733,211 - 83,768,991 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01648,660,252 - 48,687,302 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11668,068,854 - 68,081,643 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1668,068,854 - 68,081,643 (-)Ensemblpanpan1.1panPan2
SLC7A6OS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,216,704 - 81,227,802 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,216,509 - 81,227,121 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,206,837 - 81,217,969 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0581,651,673 - 81,662,776 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl581,651,472 - 81,663,163 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1581,478,426 - 81,489,551 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,161,087 - 81,172,058 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0581,802,362 - 81,813,492 (+)NCBIUU_Cfam_GSD_1.0
Slc7a6os
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934940,957,125 - 40,971,902 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,625,138 - 18,631,955 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,625,744 - 18,631,985 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC7A6OS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,872,665 - 28,883,548 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,874,220 - 28,883,572 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC7A6OS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,106,191 - 59,116,540 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl559,106,220 - 59,115,874 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604721,841,977 - 21,854,775 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000014273   ⟹   ENSHGLP00000014130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474618,001,346 - 18,008,013 (+)Ensembl
RefSeq Acc Id: XM_004842981   ⟹   XP_004843038
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474618,001,309 - 18,008,740 (+)NCBI
RefSeq Acc Id: XR_002394319
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474618,001,309 - 18,009,307 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004843038 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB17052 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014130
  ENSHGLP00100020180
GenBank Protein JAO02066 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004843038   ⟸   XM_004842981
- UniProtKB: A0A0P6JGM5 (UniProtKB/TrEMBL),   G5C691 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000014130   ⟸   ENSHGLT00000014273


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010091 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100014878 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000014273 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100020393 UniProtKB/TrEMBL
InterPro SLC7A6OS UniProtKB/TrEMBL
  TF_Iwr1_dom UniProtKB/TrEMBL
KEGG Report hgl:101725495 UniProtKB/TrEMBL
NCBI Gene Slc7a6os ENTREZGENE
PANTHER PTHR31196 UniProtKB/TrEMBL
  RNA POLYMERASE II NUCLEAR LOCALIZATION PROTEIN SLC7A6OS-RELATED UniProtKB/TrEMBL
Pfam Iwr1 UniProtKB/TrEMBL
UniProt A0A0P6JGM5 ENTREZGENE, UniProtKB/TrEMBL
  G5C691 ENTREZGENE, UniProtKB/TrEMBL