Flrt1 (fibronectin leucine rich transmembrane protein 1) - Rat Genome Database

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Gene: Flrt1 (fibronectin leucine rich transmembrane protein 1) Heterocephalus glaber
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Symbol: Flrt1
Name: fibronectin leucine rich transmembrane protein 1
RGD ID: 18906698
Description: ENCODES a protein that exhibits fibroblast growth factor receptor binding (ortholog); INVOLVED IN dendrite development (ortholog); fibroblast growth factor receptor signaling pathway (ortholog); neuron projection extension (ortholog); ASSOCIATED WITH hereditary spastic paraplegia (ortholog); high grade glioma (ortholog); intellectual disability (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasmic vesicle (ortholog); neuron projection terminus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Leucine-rich repeat transmembrane protein FLRT1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476722,169,616 - 22,189,578 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476722,167,309 - 22,248,680 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Flrt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476722,169,616 - 22,189,578 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476722,167,309 - 22,248,680 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FLRT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381164,035,931 - 64,119,171 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1164,035,931 - 64,119,173 (+)EnsemblGRCh38hg38GRCh38
GRCh371163,803,403 - 63,886,643 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,627,938 - 63,643,221 (+)NCBINCBI36Build 36hg18NCBI36
Build 341163,627,937 - 63,643,221NCBI
Celera1161,198,290 - 61,212,755 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,200,065 - 60,215,339 (+)NCBIHuRef
CHM1_11163,754,528 - 63,769,795 (+)NCBICHM1_1
T2T-CHM13v2.01164,025,770 - 64,109,031 (+)NCBIT2T-CHM13v2.0
Flrt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,064,829 - 7,143,548 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl197,069,366 - 7,083,094 (-)EnsemblGRCm39 Ensembl
GRCm38197,087,464 - 7,166,183 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,092,001 - 7,105,729 (-)EnsemblGRCm38mm10GRCm38
MGSCv37197,166,491 - 7,180,219 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36197,162,028 - 7,172,725 (-)NCBIMGSCv36mm8
Celera196,868,883 - 6,882,611 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.2NCBI
Flrt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,704,983 - 213,782,958 (-)NCBIGRCr8
mRatBN7.21204,275,785 - 204,292,844 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1204,275,367 - 204,353,750 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,630,030 - 212,635,489 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,725,268 - 219,730,726 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,416,319 - 212,421,777 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,340,481 - 222,417,915 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,344,713 - 222,350,173 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,331,246 - 229,408,594 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,764,672 - 209,770,132 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1201,813,388 - 201,818,848 (-)NCBICelera
Cytogenetic Map1q43NCBI
Flrt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,944,875 - 20,958,618 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,944,875 - 20,958,618 (-)NCBIChiLan1.0ChiLan1.0
FLRT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2965,263,103 - 65,346,567 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11166,308,345 - 66,391,711 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01159,393,536 - 59,477,611 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11162,740,800 - 62,823,299 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1162,820,380 - 62,822,404 (+)Ensemblpanpan1.1panPan2
FLRT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,926,735 - 52,958,089 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,927,572 - 52,929,659 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,531,012 - 51,607,234 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,969,594 - 54,045,837 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,972,655 - 53,974,742 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11853,072,238 - 53,148,482 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,647,729 - 52,723,987 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,432,001 - 53,508,241 (-)NCBIUU_Cfam_GSD_1.0
Flrt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,604,979 - 8,629,337 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365995,055,597 - 5,057,621 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365995,047,982 - 5,068,345 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FLRT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,976,567 - 7,991,150 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,971,782 - 8,052,572 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.227,092,604 - 7,169,106 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FLRT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1110,120,931 - 10,205,351 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl110,121,823 - 10,123,844 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038107,462,687 - 107,546,727 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000016314   ⟹   ENSHGLP00000016145
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476722,169,616 - 22,189,578 (-)Ensembl
RefSeq Acc Id: XM_021264693   ⟹   XP_021120352
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476722,167,309 - 22,248,680 (-)NCBI
RefSeq Acc Id: XR_002397416
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476722,167,309 - 22,190,150 (-)NCBI
RefSeq Acc Id: XR_002397417
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476722,167,309 - 22,190,150 (-)NCBI
RefSeq Acc Id: XR_002397418
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476722,167,309 - 22,190,150 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021120352 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04941 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016145
  ENSHGLP00100037505
  ENSHGLP00100040046
  ENSHGLP00100047888
  ENSHGLP00100053932
GenBank Protein JAO00724 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021120352   ⟸   XM_021264693
- UniProtKB: G5B6F7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000016145   ⟸   ENSHGLT00000016314


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011550 Ensembl, ENTREZGENE
  ENSHGLG00100050026 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000016314 ENTREZGENE
  ENSHGLT00100048944 UniProtKB/TrEMBL
  ENSHGLT00100057888 UniProtKB/TrEMBL
  ENSHGLT00100061634 UniProtKB/TrEMBL
  ENSHGLT00100069205 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
  SLRP UniProtKB/TrEMBL
KEGG Report hgl:101704927 UniProtKB/TrEMBL
NCBI Gene Flrt1 ENTREZGENE
PANTHER AGAP008170-PA UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN FLRT1 UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt G5B6F7 ENTREZGENE, UniProtKB/TrEMBL