Znf605 (zinc finger protein 605) - Rat Genome Database

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Gene: Znf605 (zinc finger protein 605) Heterocephalus glaber
Analyze
Symbol: Znf605
Name: zinc finger protein 605
RGD ID: 18906246
Description: ASSOCIATED WITH colorectal cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474728,232,948 - 28,249,522 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474728,232,101 - 28,254,396 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf605
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474728,232,948 - 28,249,522 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474728,232,101 - 28,254,396 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZNF605
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812132,918,306 - 132,956,306 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12132,918,306 - 132,956,306 (-)EnsemblGRCh38hg38GRCh38
GRCh3712133,494,892 - 133,532,892 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612132,008,120 - 132,042,941 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412132,108,397 - 132,143,218NCBI
Celera12133,198,265 - 133,233,123 (-)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12130,274,546 - 130,312,882 (-)NCBIHuRef
CHM1_112133,317,993 - 133,352,859 (-)NCBICHM1_1
T2T-CHM13v2.012132,969,080 - 133,013,678 (-)NCBIT2T-CHM13v2.0
Zfp605
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395110,257,898 - 110,279,402 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5110,257,958 - 110,277,660 (+)EnsemblGRCm39 Ensembl
GRCm385110,110,028 - 110,131,536 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5110,110,092 - 110,129,794 (+)EnsemblGRCm38mm10GRCm38
MGSCv375110,539,111 - 110,558,813 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365110,539,111 - 110,559,195 (+)NCBIMGSCv36mm8
Celera5107,236,560 - 107,256,256 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.3NCBI
Zfp605
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81252,202,487 - 52,234,782 (-)NCBIGRCr8
mRatBN7.21246,542,771 - 46,575,074 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1246,545,073 - 46,575,828 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01252,606,554 - 52,670,918 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,606,560 - 52,658,275 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01254,337,761 - 54,406,650 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1248,098,650 - 48,130,818 (-)NCBICelera
Cytogenetic Map12q16NCBI
Znf605
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955482216,587 - 222,312 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955482209,350 - 224,852 (+)NCBIChiLan1.0ChiLan1.0
ZNF605
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210141,035,100 - 141,073,483 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112141,031,617 - 141,069,990 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012130,403,853 - 130,441,984 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112135,005,689 - 135,042,655 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12135,005,689 - 135,042,655 (-)Ensemblpanpan1.1panPan2
ZNF605
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.126236,180 - 262,327 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl26236,180 - 257,312 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha26279,379 - 305,845 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.026294,154 - 320,632 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl26294,250 - 319,693 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.126236,042 - 262,524 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.026322,561 - 349,046 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.026254,411 - 280,632 (+)NCBIUU_Cfam_GSD_1.0
Znf605
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118121,938,256 - 121,958,892 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366602,762,144 - 2,771,536 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366602,763,543 - 2,782,428 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF605
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1422,614,134 - 22,635,698 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11422,614,079 - 22,638,290 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21424,013,665 - 24,034,346 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF605
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111128,236,405 - 128,273,374 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037116,532,825 - 116,615,801 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016251   ⟹   ENSHGLP00000016082
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474728,232,948 - 28,249,522 (-)Ensembl
RefSeq Acc Id: XM_013071893   ⟹   XP_012927347
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474728,232,101 - 28,254,396 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012927347 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016082
Reference Protein Sequences
RefSeq Acc Id: XP_012927347   ⟸   XM_013071893
RefSeq Acc Id: ENSHGLP00000016082   ⟸   ENSHGLT00000016251


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011502 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016251 ENTREZGENE
NCBI Gene Znf605 ENTREZGENE