Gabre (gamma-aminobutyric acid type A receptor subunit epsilon) - Rat Genome Database

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Gene: Gabre (gamma-aminobutyric acid type A receptor subunit epsilon) Heterocephalus glaber
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Symbol: Gabre
Name: gamma-aminobutyric acid type A receptor subunit epsilon (Ensembl:gamma-aminobutyric acid type A receptor epsilon subunit)
RGD ID: 18905617
Description: ENCODES a protein that exhibits GABA-A receptor activity (ortholog); GABA-gated chloride ion channel activity (ortholog); transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (ortholog); INVOLVED IN gamma-aminobutyric acid signaling pathway (ortholog); negative regulation of chloride transport (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Dwarfism (ortholog); FOUND IN GABA-A receptor complex (ortholog); GABA-ergic synapse (ortholog); postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-aminobutyric acid receptor subunit epsilon; gamma-aminobutyric acid type A receptor epsilon subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248833,278,737 - 3,294,198 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248833,278,786 - 3,297,417 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gabre
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248833,278,737 - 3,294,198 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248833,278,786 - 3,297,417 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GABRE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X151,953,124 - 151,974,676 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX151,953,124 - 151,974,680 (-)EnsemblGRCh38hg38GRCh38
GRCh37X151,121,596 - 151,143,148 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X150,872,252 - 150,893,807 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X150,792,164 - 150,813,719NCBI
CeleraX151,367,187 - 151,388,743 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX139,975,891 - 139,997,374 (-)NCBIHuRef
CHM1_1X150,996,531 - 151,018,085 (-)NCBICHM1_1
T2T-CHM13v2.0X150,219,338 - 150,240,900 (-)NCBIT2T-CHM13v2.0
Gabre
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X71,300,532 - 71,318,433 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX71,299,605 - 71,318,409 (-)EnsemblGRCm39 Ensembl
GRCm38X72,256,926 - 72,274,828 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX72,255,999 - 72,274,803 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X69,502,771 - 69,520,060 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X68,510,152 - 68,527,441 (-)NCBIMGSCv36mm8
CeleraX63,225,872 - 63,243,163 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.21NCBI
Gabre
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X155,102,078 - 155,120,821 (-)NCBIGRCr8
mRatBN7.2X150,060,035 - 150,078,773 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX150,060,040 - 150,078,693 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX152,252,925 - 152,270,090 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X155,787,134 - 155,804,299 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X153,328,707 - 153,345,872 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X152,220,180 - 152,237,347 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX152,218,707 - 152,237,361 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01147,946,356 - 147,963,349 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X158,335,158 - 158,353,615 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X158,408,590 - 158,427,048 (+)NCBI
Celera1131,038,889 - 131,056,053 (-)NCBICelera
Cytogenetic MapXq37NCBI
Gabre
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554987,470,881 - 7,488,902 (-)NCBIChiLan1.0ChiLan1.0
GABRE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X152,021,492 - 152,043,243 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X152,025,097 - 152,046,839 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X141,531,677 - 141,553,411 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X151,490,134 - 151,511,790 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX151,490,134 - 151,511,844 (-)Ensemblpanpan1.1panPan2
GABRE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X119,913,867 - 119,937,867 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX119,913,867 - 119,937,909 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX105,296,408 - 105,320,418 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X122,134,693 - 122,158,708 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX122,134,701 - 122,158,647 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X118,854,681 - 118,878,691 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X121,345,396 - 121,369,410 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X121,220,043 - 121,244,059 (-)NCBIUU_Cfam_GSD_1.0
Gabre
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X117,428,433 - 117,448,231 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936714812,265 - 827,957 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936714808,287 - 827,990 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABRE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX123,278,949 - 123,296,091 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X123,278,459 - 123,296,070 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X140,855,628 - 140,872,669 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GABRE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X126,524,665 - 126,554,786 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX126,526,240 - 126,554,682 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606564,320,447 - 64,341,842 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021249177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01098785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000003093   ⟹   ENSHGLP00000003039
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248833,278,737 - 3,294,198 (-)Ensembl
RefSeq Acc Id: XM_021249177   ⟹   XP_021104836
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248833,278,786 - 3,297,417 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021104836 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021104836   ⟸   XM_021249177
Ensembl Acc Id: ENSHGLP00000003039   ⟸   ENSHGLT00000003093


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002269 Ensembl
NCBI Gene Gabre ENTREZGENE
UniProt A0AAX6S6I8_HETGA UniProtKB/TrEMBL