Rbmx2 (RNA binding motif protein X-linked 2) - Rat Genome Database

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Gene: Rbmx2 (RNA binding motif protein X-linked 2) Heterocephalus glaber
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Symbol: Rbmx2
Name: RNA binding motif protein X-linked 2
RGD ID: 18901302
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN mRNA splicing, via spliceosome (inferred); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN catalytic step 2 spliceosome (inferred); endoplasmic reticulum (inferred); nuclear membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding motif protein, X-linked 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247979,679,171 - 9,690,066 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247979,679,066 - 9,689,943 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rbmx2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247979,679,171 - 9,690,066 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247979,679,066 - 9,689,943 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RBMX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X130,401,987 - 130,413,656 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX130,401,987 - 130,413,656 (+)EnsemblGRCh38hg38GRCh38
GRCh37X129,535,961 - 129,547,630 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X129,363,624 - 129,374,998 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X129,261,758 - 129,273,163NCBI
CeleraX129,922,409 - 129,933,783 (+)NCBICelera
Cytogenetic MapXq26.1NCBI
HuRefX118,931,323 - 118,942,334 (+)NCBIHuRef
CHM1_1X129,447,576 - 129,458,950 (+)NCBICHM1_1
T2T-CHM13v2.0X128,721,817 - 128,733,484 (+)NCBIT2T-CHM13v2.0
Rbmx2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X47,783,881 - 47,799,596 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX47,783,881 - 47,799,600 (+)EnsemblGRCm39 Ensembl
GRCm38X48,695,004 - 48,710,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX48,695,004 - 48,710,723 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X46,048,181 - 46,063,896 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X44,939,631 - 44,955,346 (+)NCBIMGSCv36mm8
CeleraX36,198,827 - 36,211,268 (+)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX25.69NCBI
Rbmx2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X132,766,395 - 132,774,120 (+)NCBIGRCr8
mRatBN7.2X127,888,514 - 127,896,239 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX127,888,438 - 127,896,869 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX130,014,285 - 130,022,027 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X133,585,048 - 133,592,773 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X131,111,456 - 131,119,198 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X135,550,931 - 135,558,440 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX135,550,834 - 135,558,440 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X135,621,255 - 135,628,591 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X135,113,789 - 135,121,414 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX126,836,235 - 126,843,698 (+)NCBICelera
Cytogenetic MapXq36NCBI
Rbmx2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554734,654,748 - 4,664,590 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554734,654,257 - 4,664,419 (-)NCBIChiLan1.0ChiLan1.0
RBMX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X129,822,590 - 129,833,670 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X129,826,204 - 129,837,284 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X119,528,923 - 119,540,319 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X129,820,864 - 129,831,902 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX129,820,864 - 129,831,902 (+)Ensemblpanpan1.1panPan2
RBMX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X101,533,732 - 101,547,147 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX101,533,835 - 101,544,552 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX87,711,320 - 87,724,740 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X103,393,045 - 103,406,509 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX103,393,156 - 103,406,483 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X100,807,764 - 100,821,183 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X102,653,440 - 102,666,817 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X102,431,938 - 102,445,358 (+)NCBIUU_Cfam_GSD_1.0
Rbmx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X99,741,791 - 99,754,645 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364791,233,899 - 1,245,619 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364791,232,921 - 1,245,665 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBMX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX106,880,912 - 106,890,390 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X106,880,912 - 106,890,391 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RBMX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X105,660,294 - 105,671,417 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX105,660,614 - 105,670,921 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606543,080,371 - 43,091,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000011383   ⟹   ENSHGLP00000011258
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247979,679,171 - 9,690,066 (+)Ensembl
RefSeq Acc Id: XM_004860063   ⟹   XP_004860120
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247979,679,066 - 9,689,943 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004860120 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000034395
  ENSHGLP00100059808
GenBank Protein JAN96189 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004860120   ⟸   XM_004860063
- UniProtKB: A0A0N8ESE0 (UniProtKB/TrEMBL),   G5AY37 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000011258   ⟸   ENSHGLT00000011383


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008080 Ensembl
  ENSHGLG00000048307 UniProtKB/TrEMBL
  ENSHGLG00100045007 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000050632 UniProtKB/TrEMBL
  ENSHGLT00100058094 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RNA_proc/Spliceosome_comp UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  RRM_Ist3_like UniProtKB/TrEMBL
KEGG Report hgl:101703089 UniProtKB/TrEMBL
NCBI Gene Rbmx2 ENTREZGENE
PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 UniProtKB/TrEMBL
  RNA-BINDING MOTIF PROTEIN, X-LINKED 2 UniProtKB/TrEMBL
  RNA-BINDING MOTIF PROTEIN, X-LINKED 2 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0N8ESE0 ENTREZGENE, UniProtKB/TrEMBL
  G5AY37 ENTREZGENE, UniProtKB/TrEMBL