Selenoo (selenoprotein O) - Rat Genome Database

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Gene: Selenoo (selenoprotein O) Heterocephalus glaber
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Symbol: Selenoo
Name: selenoprotein O
RGD ID: 18900490
Description: ENCODES a protein that exhibits AMPylase activity (ortholog); INVOLVED IN protein adenylylation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog); FOUND IN chromosome (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752542,637 - 550,642 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752542,378 - 551,300 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Selenoo
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752542,637 - 550,642 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752542,378 - 551,300 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SELENOO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,201,011 - 50,217,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,201,011 - 50,217,616 (+)EnsemblGRCh38hg38GRCh38
GRCh372250,639,440 - 50,656,045 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362248,981,535 - 48,998,172 (+)NCBINCBI36Build 36hg18NCBI36
Celera2234,514,319 - 34,530,956 (+)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,542,320 - 33,553,289 (+)NCBIHuRef
CHM1_12250,598,148 - 50,614,788 (+)NCBICHM1_1
T2T-CHM13v2.02250,707,772 - 50,724,578 (+)NCBIT2T-CHM13v2.0
Selenoo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391588,973,241 - 88,984,542 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1588,973,287 - 88,984,543 (+)EnsemblGRCm39 Ensembl
GRCm381589,089,038 - 89,100,339 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,089,084 - 89,100,340 (+)EnsemblGRCm38mm10GRCm38
MGSCv371588,919,537 - 88,930,770 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361588,916,873 - 88,928,106 (+)NCBIMGSCv36mm8
Celera1591,217,015 - 91,228,224 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.6NCBI
Selenoo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,047,555 - 122,058,448 (+)NCBIGRCr8
mRatBN7.27120,167,913 - 120,178,806 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,167,913 - 120,178,805 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7121,918,833 - 121,929,694 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,144,998 - 124,155,859 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,108,021 - 124,118,902 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,071,122 - 130,082,015 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,071,122 - 130,082,014 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07129,757,068 - 129,767,961 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,392,500 - 127,403,393 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,426,837 - 127,437,268 (+)NCBI
Celera7116,641,864 - 116,652,758 (+)NCBICelera
Cytogenetic Map7q34NCBI
Selenoo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,245,456 - 33,256,387 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,235,382 - 33,253,484 (+)NCBIChiLan1.0ChiLan1.0
SELENOO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,106,191 - 60,123,114 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12262,792,577 - 62,809,413 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,429,334 - 30,446,169 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,428,266 - 49,446,285 (+)NCBIpanpan1.1PanPan1.1panPan2
SELENOO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11017,025,023 - 17,032,922 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,968,287 - 17,033,250 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1017,003,070 - 17,010,969 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,752,103 - 17,760,002 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1017,695,457 - 17,765,745 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,476,153 - 17,484,044 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,799,207 - 17,807,106 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,931,423 - 17,939,322 (-)NCBIUU_Cfam_GSD_1.0
Selenoo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945587,607 - 596,315 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629587,913 - 596,190 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629587,607 - 597,695 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELENOO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5467,547 - 481,230 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15467,546 - 480,836 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25110,690,389 - 110,703,696 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SELENOO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,692,237 - 32,708,595 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,693,005 - 32,708,437 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604592,646,908 - 92,663,024 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000026902   ⟹   ENSHGLP00000026665
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624752542,637 - 550,642 (-)Ensembl
RefSeq Acc Id: XM_004845336   ⟹   XP_004845393
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752542,378 - 551,274 (-)NCBI
RefSeq Acc Id: XM_021258748   ⟹   XP_021114407
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752542,378 - 551,294 (-)NCBI
RefSeq Acc Id: XM_021258749   ⟹   XP_021114408
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752542,646 - 551,300 (-)NCBI
RefSeq Acc Id: XM_021258750   ⟹   XP_021114409
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752542,852 - 551,299 (-)NCBI
RefSeq Acc Id: XM_021258751   ⟹   XP_021114410
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752542,820 - 551,299 (-)NCBI
RefSeq Acc Id: XR_002395197
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624752542,627 - 551,297 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004845393 (Get FASTA)   NCBI Sequence Viewer  
  XP_021114407 (Get FASTA)   NCBI Sequence Viewer  
  XP_021114408 (Get FASTA)   NCBI Sequence Viewer  
  XP_021114409 (Get FASTA)   NCBI Sequence Viewer  
  XP_021114410 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026665
RefSeq Acc Id: XP_021114407   ⟸   XM_021258748
- Peptide Label: isoform X2
- UniProtKB: A0AAX6SY56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004845393   ⟸   XM_004845336
- Peptide Label: isoform X1
- UniProtKB: A0AAX6P775 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114408   ⟸   XM_021258749
- Peptide Label: isoform X3
- UniProtKB: A0AAX6T039 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114410   ⟸   XM_021258751
- Peptide Label: isoform X5
- UniProtKB: A0AAX6T0V9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114409   ⟸   XM_021258750
- Peptide Label: isoform X4
- UniProtKB: A0AAX6T0N6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000026665   ⟸   ENSHGLT00000026902


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018969 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026902 ENTREZGENE
NCBI Gene Selenoo ENTREZGENE
UniProt A0AAX6P775 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SY56 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T039 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T0N6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T0V9 ENTREZGENE, UniProtKB/TrEMBL