Ppp1r18 (protein phosphatase 1 regulatory subunit 18) - Rat Genome Database

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Gene: Ppp1r18 (protein phosphatase 1 regulatory subunit 18) Heterocephalus glaber
Analyze
Symbol: Ppp1r18
Name: protein phosphatase 1 regulatory subunit 18
RGD ID: 18899855
Description: ENCODES a protein that exhibits phosphatase binding (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); megacolon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phostensin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475425,027,792 - 25,034,842 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ppp1r18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475425,027,792 - 25,034,842 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PPP1R18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,676,389 - 30,688,391 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,676,389 - 30,687,895 (-)EnsemblGRCh38hg38GRCh38
GRCh37630,644,166 - 30,654,984 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,752,145 - 30,761,963 (-)NCBINCBI36Build 36hg18NCBI36
Build 34630,752,146 - 30,761,804NCBI
Celera632,242,303 - 32,253,809 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,444,133 - 30,455,610 (-)NCBIHuRef
CHM1_1630,646,276 - 30,657,779 (-)NCBICHM1_1
T2T-CHM13v2.0630,540,595 - 30,552,089 (-)NCBIT2T-CHM13v2.0
Ppp1r18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,176,483 - 36,186,488 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1736,176,485 - 36,186,488 (+)EnsemblGRCm39 Ensembl
GRCm381735,865,593 - 35,875,596 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,865,593 - 35,875,596 (+)EnsemblGRCm38mm10GRCm38
MGSCv371736,002,540 - 36,012,541 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,474,136 - 35,483,649 (+)NCBIMGSCv36mm8
MGSCv361734,955,011 - 34,964,657 (+)NCBIMGSCv36mm8
Celera1739,375,419 - 39,385,004 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.72NCBI
Ppp1r18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8202,882,370 - 2,892,329 (-)NCBIGRCr8
mRatBN7.2202,877,567 - 2,887,526 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl202,877,567 - 2,891,802 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx202,929,329 - 2,939,012 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0202,934,300 - 2,943,985 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0202,960,463 - 2,970,126 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,372,412 - 3,397,351 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,372,413 - 3,397,039 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,469,936 - 5,494,453 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,013,902 - 3,034,973 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,025,916 - 3,035,199 (-)NCBI
Celera20303,632 - 313,449 (-)NCBICelera
Cytogenetic Map20p12NCBI
Ppp1r18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583673,393 - 680,836 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955583673,634 - 681,439 (-)NCBIChiLan1.0ChiLan1.0
PPP1R18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,236,579 - 45,248,063 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,199,780 - 41,210,720 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,421,134 - 30,431,964 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,290,562 - 31,301,566 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,290,562 - 31,301,566 (-)Ensemblpanpan1.1panPan2
PPP1R18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112481,276 - 489,093 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12482,106 - 488,686 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12618,596 - 626,971 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012624,431 - 632,806 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12624,441 - 632,265 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112481,780 - 490,151 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012551,290 - 559,646 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012619,874 - 628,233 (-)NCBIUU_Cfam_GSD_1.0
Ppp1r18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494633,980,319 - 33,991,274 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837345,570 - 355,058 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936837345,578 - 356,175 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,211,808 - 23,221,384 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,211,806 - 23,222,295 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2726,933,736 - 26,944,155 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPP1R18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,765,854 - 41,777,697 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,766,517 - 41,778,265 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604430,373,563 - 30,385,064 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004847073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01035217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004847073   ⟹   XP_004847130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475425,027,792 - 25,034,842 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004847130 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004847130   ⟸   XM_004847073
- UniProtKB: G5C3C1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
InterPro Phostensin/Taperin_PP1-bd_dom UniProtKB/TrEMBL
  PPP1R18/Tprn UniProtKB/TrEMBL
NCBI Gene Ppp1r18 ENTREZGENE
PANTHER PHOSTENSIN UniProtKB/TrEMBL
  TON-B BOX DOMAIN UniProtKB/TrEMBL
Pfam Phostensin UniProtKB/TrEMBL
UniProt G5C3C1 ENTREZGENE, UniProtKB/TrEMBL