CUNH2orf80 (chromosome unknown C2orf80 homolog) - Rat Genome Database

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Gene: CUNH2orf80 (chromosome unknown C2orf80 homolog) Heterocephalus glaber
Analyze
Symbol: CUNH2orf80 (Ensembl: C2orf80)
Name: chromosome unknown C2orf80 homolog
RGD ID: 18899821
Description: ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); primary pulmonary hypertension (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein C2orf80; uncharacterized protein C2orf80 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247657,869,493 - 7,886,672 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247657,865,986 - 7,890,584 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
CUNH2orf80
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247657,869,493 - 7,886,672 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247657,865,986 - 7,890,584 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
C2orf80
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382208,165,347 - 208,190,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2208,165,343 - 208,190,030 (-)EnsemblGRCh38hg38GRCh38
GRCh372209,030,071 - 209,054,754 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362208,738,316 - 208,763,018 (-)NCBINCBI36Build 36hg18NCBI36
Celera2202,798,308 - 202,823,009 (-)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2200,878,499 - 200,903,263 (-)NCBIHuRef
CHM1_12209,035,908 - 209,060,551 (-)NCBICHM1_1
T2T-CHM13v2.02208,645,334 - 208,670,364 (-)NCBIT2T-CHM13v2.0
D630023F18Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39165,144,443 - 65,162,509 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl165,144,444 - 65,162,373 (-)EnsemblGRCm39 Ensembl
GRCm38165,105,284 - 65,123,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl165,105,285 - 65,123,214 (-)EnsemblGRCm38mm10GRCm38
MGSCv37165,153,887 - 65,169,767 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36165,041,589 - 65,057,469 (-)NCBIMGSCv36mm8
MGSCv36165,752,168 - 65,768,182 (-)NCBIMGSCv36mm8
Celera165,599,983 - 65,614,755 (-)NCBICelera
Cytogenetic Map1C2NCBI
cM Map132.84NCBI
CUNH2orf80
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554576,940,137 - 6,961,517 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554576,940,355 - 6,961,464 (+)NCBIChiLan1.0ChiLan1.0
C13H2orf80
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213110,770,831 - 110,795,678 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B110,785,748 - 110,810,650 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B95,396,712 - 95,421,688 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B213,519,800 - 213,544,445 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B213,519,806 - 213,544,445 (-)Ensemblpanpan1.1panPan2
C37H2orf80
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13716,457,255 - 16,482,276 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3716,424,884 - 16,482,227 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3717,340,255 - 17,365,033 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03716,392,903 - 16,418,036 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3716,393,217 - 16,418,160 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13716,337,701 - 16,362,520 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03716,310,923 - 16,335,961 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03716,319,960 - 16,344,926 (-)NCBIUU_Cfam_GSD_1.0
CUNH2orf80
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303164,793,521 - 164,823,594 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936950405,510 - 433,370 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_004936950435,444 - 438,575 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936950405,464 - 438,524 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C15H2orf80
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15111,281,012 - 111,303,915 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115111,280,995 - 111,303,915 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215122,800,133 - 122,823,098 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH2orf80
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11093,970,325 - 93,994,849 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1093,970,069 - 93,994,622 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040105,376,367 - 105,400,811 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000010482   ⟹   ENSHGLP00000010367
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247657,869,493 - 7,886,672 (+)Ensembl
RefSeq Acc Id: XM_004851137   ⟹   XP_004851194
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247657,866,020 - 7,890,390 (+)NCBI
RefSeq Acc Id: XM_021263543   ⟹   XP_021119202
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247657,865,986 - 7,890,584 (+)NCBI
RefSeq Acc Id: XM_021263544   ⟹   XP_021119203
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247657,865,989 - 7,890,393 (+)NCBI
RefSeq Acc Id: XR_002397091
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247657,866,001 - 7,890,291 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004851194 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119202 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119203 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010367
  ENSHGLP00000051530
  ENSHGLP00100055644
GenBank Protein JAN98654 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021119202   ⟸   XM_021263543
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021119203   ⟸   XM_021263544
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J384 (UniProtKB/TrEMBL),   G5C173 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004851194   ⟸   XM_004851137
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000010367   ⟸   ENSHGLT00000010482


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007437 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100019047 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000010482 ENTREZGENE
  ENSHGLT00000045717 UniProtKB/TrEMBL
  ENSHGLT00100042529 UniProtKB/TrEMBL
InterPro C2orf80 UniProtKB/TrEMBL
NCBI Gene CUNH2orf80 ENTREZGENE
PANTHER CHROMOSOME 2 OPEN READING FRAME 80 UniProtKB/TrEMBL
  PTHR36296 UniProtKB/TrEMBL
Pfam DUF5563 UniProtKB/TrEMBL
UniProt A0A0P6J384 ENTREZGENE, UniProtKB/TrEMBL
  G5C173 ENTREZGENE, UniProtKB/TrEMBL