TMEM47 (transmembrane protein 47) - Rat Genome Database

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Gene: TMEM47 (transmembrane protein 47) Chlorocebus sabaeus
Analyze
Symbol: TMEM47
Name: transmembrane protein 47
RGD ID: 18790472
Description: INVOLVED IN cell-cell adhesion (inferred); ASSOCIATED WITH autistic disorder (ortholog); Dandy-Walker syndrome (ortholog); McLeod syndrome (ortholog); FOUND IN adherens junction (inferred); anchoring junction (inferred); cell-cell junction (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X33,172,996 - 33,203,711 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX33,172,990 - 33,203,678 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605635,234,853 - 35,265,637 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TMEM47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X33,172,996 - 33,203,711 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX33,172,990 - 33,203,678 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605635,234,853 - 35,265,637 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TMEM47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X34,627,075 - 34,657,285 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX34,627,075 - 34,657,285 (-)EnsemblGRCh38hg38GRCh38
GRCh37X34,645,192 - 34,675,402 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X34,555,102 - 34,585,326 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X34,404,838 - 34,435,062NCBI
CeleraX38,772,420 - 38,802,641 (-)NCBICelera
Cytogenetic MapXp21.1NCBI
HuRefX32,387,635 - 32,399,815 (-)NCBIHuRef
CHM1_1X34,675,754 - 34,705,981 (-)NCBICHM1_1
T2T-CHM13v2.0X34,221,708 - 34,251,928 (-)NCBIT2T-CHM13v2.0
Tmem47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X80,114,250 - 80,141,481 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX80,114,304 - 80,141,478 (+)EnsemblGRCm39 Ensembl
GRCm38X81,070,644 - 81,097,875 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX81,070,698 - 81,097,872 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X78,315,983 - 78,343,214 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X77,323,430 - 77,349,182 (+)NCBIMGSCv36mm8
CeleraX72,328,417 - 72,355,541 (+)NCBICelera
Cytogenetic MapXBNCBI
cM MapX38.38NCBI
Tmem47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X49,338,532 - 49,365,026 (+)NCBIGRCr8
mRatBN7.2X45,421,405 - 45,447,900 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX45,421,405 - 45,447,900 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX46,784,980 - 46,811,486 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X50,251,798 - 50,278,304 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X47,917,000 - 47,943,508 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X48,779,110 - 48,805,644 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX48,779,110 - 48,805,644 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X48,984,317 - 49,010,851 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X67,522,289 - 67,549,061 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX46,067,701 - 46,094,193 (+)NCBICelera
Cytogenetic MapXq21NCBI
Tmem47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555711,191,700 - 1,222,309 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555711,192,213 - 1,222,057 (+)NCBIChiLan1.0ChiLan1.0
TMEM47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X36,475,099 - 36,505,277 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X36,478,476 - 36,508,636 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X27,277,397 - 27,307,540 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X34,807,038 - 34,836,965 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX34,810,272 - 34,836,876 (-)Ensemblpanpan1.1panPan2
TMEM47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X29,675,386 - 29,705,941 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX29,675,387 - 29,705,941 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX34,669,753 - 34,700,160 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X29,719,784 - 29,750,211 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX29,719,784 - 29,750,257 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X29,776,454 - 29,806,855 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X29,765,071 - 29,795,450 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X29,874,925 - 29,905,345 (-)NCBIUU_Cfam_GSD_1.0
Tmem47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X22,149,813 - 22,177,523 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365021,993,749 - 2,018,204 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365021,990,524 - 2,018,707 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX30,584,046 - 30,615,232 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X30,584,044 - 30,615,233 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X33,945,787 - 33,976,572 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Tmem47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476221,100,133 - 21,129,895 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476221,100,254 - 21,129,793 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 17 33 33 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007991391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000012178   ⟹   ENSCSAP00000010225
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX33,172,990 - 33,203,678 (-)Ensembl
RefSeq Acc Id: XM_007991391   ⟹   XP_007989582
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X33,172,996 - 33,203,711 (-)NCBI
Vero_WHO_p1.0NW_02366605635,234,853 - 35,265,637 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007989582 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010225
  ENSCSAP00000010225.1
RefSeq Acc Id: XP_007989582   ⟸   XM_007991391
- UniProtKB: A0A0D9RNN6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000010225   ⟸   ENSCSAT00000012178


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014086 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012178.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro P53_induced UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
KEGG Report csab:103231783 UniProtKB/TrEMBL
NCBI Gene TMEM47 ENTREZGENE
PANTHER PTHR14399 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 47 UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
UniProt A0A0D9RNN6 ENTREZGENE, UniProtKB/TrEMBL