NEXMIF (neurite extension and migration factor) - Rat Genome Database

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Gene: NEXMIF (neurite extension and migration factor) Chlorocebus sabaeus
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Symbol: NEXMIF
Name: neurite extension and migration factor
RGD ID: 18779925
Description: INVOLVED IN negative regulation of cell adhesion mediated by integrin (ortholog); negative regulation of cell-cell adhesion mediated by cadherin (ortholog); negative regulation of cell-matrix adhesion (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytosol (inferred); midbody (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KIAA2022; protein KIAA2022 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X64,332,957 - 64,530,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX64,334,196 - 64,340,549 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606717,196,621 - 17,395,597 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA)
midbody  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NEXMIF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X64,332,957 - 64,530,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX64,334,196 - 64,340,549 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606717,196,621 - 17,395,597 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
NEXMIF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X74,732,856 - 74,925,452 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX74,732,856 - 74,925,472 (-)EnsemblGRCh38hg38GRCh38
GRCh37X73,952,691 - 74,145,287 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X73,870,137 - 74,061,709 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX74,236,153 - 74,428,748 (-)NCBICelera
Cytogenetic MapXq13.3NCBI
HuRefX67,587,986 - 67,778,886 (-)NCBIHuRef
CHM1_1X73,845,555 - 74,038,181 (-)NCBICHM1_1
T2T-CHM13v2.0X73,166,463 - 73,359,096 (-)NCBIT2T-CHM13v2.0
Nexmif
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X103,120,367 - 103,245,403 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX103,121,040 - 103,244,791 (-)EnsemblGRCm39 Ensembl
GRCm38X104,076,761 - 104,201,783 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX104,077,434 - 104,201,185 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X101,272,774 - 101,396,456 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X100,285,909 - 100,403,904 (-)NCBIMGSCv36mm8
CeleraX90,976,514 - 91,092,555 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX46.48NCBI
Nexmif
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X73,153,786 - 73,284,943 (-)NCBIGRCr8
mRatBN7.2X69,088,076 - 69,219,253 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX69,088,076 - 69,112,930 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX70,597,183 - 70,622,041 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X74,097,485 - 74,122,346 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X71,658,669 - 71,683,534 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X74,943,440 - 75,053,559 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX74,945,082 - 74,968,405 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X75,748,099 - 75,852,569 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X92,073,589 - 92,081,623 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX70,444,945 - 70,469,768 (-)NCBICelera
Cytogenetic MapXq22NCBI
Nexmif
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955562780,189 - 968,083 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955562780,172 - 786,049 (-)NCBIChiLan1.0ChiLan1.0
NEXMIF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X74,415,648 - 74,608,170 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X74,419,979 - 74,611,783 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X63,985,226 - 64,177,750 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X74,107,799 - 74,292,323 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX74,107,799 - 74,114,635 (-)Ensemblpanpan1.1panPan2
NEXMIF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X57,986,884 - 58,120,453 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX57,992,476 - 58,013,478 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX49,165,913 - 49,299,478 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X59,225,238 - 59,358,844 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX59,230,777 - 59,358,928 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X56,945,135 - 57,078,689 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X58,524,242 - 58,664,141 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X58,131,656 - 58,265,221 (-)NCBIUU_Cfam_GSD_1.0
Nexmif
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X43,790,406 - 43,907,835 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366831,042,288 - 1,157,377 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366831,041,739 - 1,157,382 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEXMIF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX59,972,373 - 60,120,021 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X59,967,712 - 60,013,938 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X68,178,778 - 68,329,023 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Nexmif
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248366,067,156 - 6,073,035 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248365,907,848 - 6,075,518 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 18 34 34 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000009093   ⟹   ENSCSAP00000007223
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX64,334,196 - 64,340,549 (-)Ensembl
RefSeq Acc Id: XM_007992100   ⟹   XP_007990291
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X64,332,957 - 64,530,082 (-)NCBI
Vero_WHO_p1.0NW_02366606717,196,621 - 17,395,597 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007990291 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000007223
  ENSCSAP00000007223.1
RefSeq Acc Id: XP_007990291   ⟸   XM_007992100
- UniProtKB: A0A0D9RF34 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000007223   ⟸   ENSCSAT00000009093


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011002 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009093.1 UniProtKB/TrEMBL
InterPro DUF4683 UniProtKB/TrEMBL
  Nexmif UniProtKB/TrEMBL
KEGG Report csab:103232212 UniProtKB/TrEMBL
NCBI Gene NEXMIF ENTREZGENE
PANTHER NEURITE EXTENSION AND MIGRATION FACTOR UniProtKB/TrEMBL
  PTHR46946 UniProtKB/TrEMBL
Pfam DUF4683 UniProtKB/TrEMBL
UniProt A0A0D9RF34 ENTREZGENE, UniProtKB/TrEMBL