AMPD1 (adenosine monophosphate deaminase 1) - Rat Genome Database

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Gene: AMPD1 (adenosine monophosphate deaminase 1) Chlorocebus sabaeus
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Symbol: AMPD1
Name: adenosine monophosphate deaminase 1
RGD ID: 18748576
Description: ENCODES a protein that exhibits myosin heavy chain binding (ortholog); INVOLVED IN response to ATP (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH Adenosine Monophosphate Deaminase Deficiency (ortholog); autistic disorder (ortholog); congestive heart failure (ortholog); FOUND IN cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AMP deaminase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12018,973,547 - 18,996,082 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2018,974,204 - 18,996,293 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603821,728,019 - 21,751,276 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
AMPD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12018,973,547 - 18,996,082 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2018,974,204 - 18,996,293 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603821,728,019 - 21,751,276 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
AMPD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381114,673,098 - 114,695,546 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1114,673,090 - 114,695,618 (-)EnsemblGRCh38hg38GRCh38
GRCh371115,215,719 - 115,238,167 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361115,017,245 - 115,039,699 (-)NCBINCBI36Build 36hg18NCBI36
Build 341114,927,763 - 114,950,218NCBI
Celera1113,444,980 - 113,467,497 (-)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1113,074,205 - 113,096,714 (-)NCBIHuRef
CHM1_11115,330,528 - 115,353,046 (-)NCBICHM1_1
T2T-CHM13v2.01114,684,545 - 114,707,007 (-)NCBIT2T-CHM13v2.0
Ampd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393102,981,330 - 103,007,038 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3102,981,330 - 103,007,036 (+)EnsemblGRCm39 Ensembl
GRCm383103,073,897 - 103,099,720 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3103,074,014 - 103,099,720 (+)EnsemblGRCm38mm10GRCm38
MGSCv373102,877,937 - 102,903,643 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363103,203,085 - 103,228,775 (+)NCBIMGSCv36mm8
Celera3105,279,015 - 105,304,764 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.25NCBI
Ampd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82193,287,219 - 193,308,446 (+)NCBIGRCr8
mRatBN7.22190,598,707 - 190,619,938 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2190,598,700 - 190,619,938 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2198,196,323 - 198,217,325 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02196,068,738 - 196,089,807 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02190,886,015 - 190,907,019 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02205,568,934 - 205,589,961 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2205,568,935 - 205,590,021 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02224,999,541 - 225,020,451 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42198,308,512 - 198,331,019 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12198,271,265 - 198,293,773 (+)NCBI
Celera2183,072,165 - 183,093,534 (+)NCBICelera
RH 3.4 Map21322.2RGD
Cytogenetic Map2q34NCBI
Ampd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543517,962,514 - 17,991,556 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543517,962,487 - 17,991,625 (-)NCBIChiLan1.0ChiLan1.0
AMPD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21107,335,357 - 107,358,132 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11106,929,421 - 106,952,175 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0187,858,602 - 87,881,348 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11122,912,417 - 122,934,476 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1122,912,417 - 122,934,476 (+)Ensemblpanpan1.1panPan2
AMPD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11752,377,411 - 52,399,525 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1752,377,402 - 52,399,520 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1752,027,974 - 52,050,104 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01753,254,745 - 53,276,859 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1753,254,751 - 53,276,817 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11752,288,891 - 52,311,015 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01752,331,044 - 52,353,189 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01752,904,387 - 52,926,524 (-)NCBIUU_Cfam_GSD_1.0
Ampd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505814,431,737 - 14,455,624 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493662733,350 - 57,166 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493662733,350 - 57,231 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AMPD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4105,868,897 - 105,893,769 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14105,868,834 - 105,892,171 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24116,057,642 - 116,080,925 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ampd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477210,320,735 - 10,348,464 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477210,320,837 - 10,350,237 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
3 3 17 18 18 2 2

Sequence


Ensembl Acc Id: ENSCSAT00000016874   ⟹   ENSCSAP00000016370
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2018,974,204 - 18,996,293 (+)Ensembl
RefSeq Acc Id: XM_007977475   ⟹   XP_007975666
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12018,973,547 - 18,996,082 (+)NCBI
Vero_WHO_p1.0NW_02366603821,728,019 - 21,751,276 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037998059   ⟹   XP_037853987
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603821,728,019 - 21,751,276 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007975666 (Get FASTA)   NCBI Sequence Viewer  
  XP_037853987 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016370
  ENSCSAP00000016370.1
RefSeq Acc Id: XP_007975666   ⟸   XM_007977475
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S681 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000016370   ⟸   ENSCSAT00000016874
RefSeq Acc Id: XP_037853987   ⟸   XM_037998059
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001655 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016874.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.800.20 UniProtKB/TrEMBL
  Metal-dependent hydrolases UniProtKB/TrEMBL
InterPro A/AMP_deam_AS UniProtKB/TrEMBL
  AMPD UniProtKB/TrEMBL
  Metal_Hydrolase UniProtKB/TrEMBL
KEGG Report csab:103224170 UniProtKB/TrEMBL
NCBI Gene AMPD1 ENTREZGENE
PANTHER PTHR11359 UniProtKB/TrEMBL
  PTHR11359:SF1 UniProtKB/TrEMBL
Pfam AMP_deaminase UniProtKB/TrEMBL
PIRSF AMP_deaminase_met UniProtKB/TrEMBL
PROSITE A_DEAMINASE UniProtKB/TrEMBL
Superfamily-SCOP SSF51556 UniProtKB/TrEMBL
UniProt A0A0D9S681 ENTREZGENE, UniProtKB/TrEMBL