TMEM179B (transmembrane protein 179B)

Gene: TMEM179B (transmembrane protein 179B) Chlorocebus sabaeus

Analyze

Symbol:

TMEM179B

Name:

transmembrane protein 179B

RGD ID:

18740050

Description:

ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN nuclear speck (ortholog); nucleolus (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	11,113,066 - 11,115,863 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	11,113,254 - 11,115,771 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	108,456,115 - 108,458,713 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

leukocyte adhesion deficiency 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

nuclear speck (ISO)

nucleolus (ISO)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

TMEM179B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	11,113,066 - 11,115,863 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	11,113,254 - 11,115,771 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	108,456,115 - 108,458,713 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TMEM179B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	62,787,402 - 62,790,400 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	62,787,402 - 62,790,400 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	62,554,874 - 62,557,872 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	62,311,450 - 62,314,448 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	59,883,458 - 59,886,456 (+)	NCBI		Celera
Cytogenetic Map	11	q12.3	NCBI
HuRef	11	58,883,899 - 58,886,898 (+)	NCBI		HuRef
CHM1_1	11	62,437,956 - 62,440,954 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	62,776,793 - 62,779,792 (+)	NCBI		T2T-CHM13v2.0

Tmem179b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	8,749,886 - 8,751,831 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	8,749,889 - 8,751,831 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	8,772,522 - 8,774,467 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	8,772,525 - 8,774,467 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	8,847,012 - 8,848,957 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	8,839,574 - 8,841,487 (-)	NCBI		MGSCv36	mm8
Celera	19	8,532,413 - 8,534,358 (-)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	5.55	NCBI

Tmem179b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	215,099,245 - 215,101,231 (-)	NCBI		GRCr8
mRatBN7.2	1	205,670,126 - 205,672,112 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	205,666,744 - 205,672,112 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	214,078,544 - 214,080,530 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	221,113,677 - 221,115,663 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	213,806,380 - 213,808,366 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	224,972,218 - 224,975,091 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	224,972,218 - 224,974,203 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	231,910,390 - 231,912,736 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	211,443,288 - 211,445,273 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	203,183,056 - 203,185,041 (-)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

TMEM179B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	64,012,488 - 64,015,351 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	65,055,181 - 65,058,043 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	58,142,806 - 58,145,668 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	61,498,409 - 61,499,816 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	61,498,409 - 61,499,816 (+)	Ensembl	panpan1.1		panPan2

TMEM179B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	53,896,518 - 53,898,716 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	53,896,518 - 53,898,659 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	52,502,559 - 52,504,761 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	54,948,986 - 54,951,188 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	54,946,941 - 54,951,142 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	54,045,602 - 54,047,804 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	53,620,063 - 53,622,265 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	54,416,326 - 54,418,528 (-)	NCBI		UU_Cfam_GSD_1.0

Tmem179b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	10,388,816 - 10,390,927 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936581	498,178 - 504,853 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936581	502,562 - 504,826 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM179B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	8,983,759 - 8,986,080 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	8,983,822 - 8,986,106 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	8,329,062 - 8,331,346 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Tmem179b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624926	1,244,780 - 1,246,469 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	15	34
Low		5	26
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007995197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000004766 ⟹ ENSCSAP00000003011

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	1	11,113,254 - 11,115,771 (-)	Ensembl

RefSeq Acc Id:

XM_007995197 ⟹ XP_007993388

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	11,113,066 - 11,115,863 (-)	NCBI
Vero_WHO_p1.0	NW_023666038	108,456,115 - 108,458,711 (-)	NCBI

Sequence:

show sequence

AAGTGACGTCTCCATTTTCGTGAGTCGCGCCGGATAAGGTGGGGTTTGGCCGGGTTGAGGCTGT
GGCGGCGCTTCCTGGTGGTCAGGGCGCCATGGCGCTGCCCTGGCTGCAGCGCGTCGAGCTTGCG
CTGTTTGCTGCCGCCTTCCTGTGCGGGGCCGTGGCGGCCGCGGCGCTGACTCGGACCCAGGGCT
CCTTCAGTAGTAGATGTCCCCTATATGGTGTCGCCACCCTGAATGGCTCCTCCCTGGCCTTATC
CCATCCCTCCGCACCATCCCTCTGCTACTTTGTAGCTGGGGCCTCTGGCCTCTTGGCCCTCTAC
TGCCTCCTGCTTCTGCTCTTCTGGATCTACAGCAGCTGCATTGAGGACTCCCACAGAGGTTCTA
TAGGGCTGCGCATTGCACTGGCCATCTCAGCTATAGCCATCTTCCTGGTCTTGGTGTCTGCCTG
TATCCTTCGATTTGGCACCAGGTCTCTCTGCAACTCCATCATCTCCCTGAACACTACAATTAGC
TGTTCTGAAGCCCAGAAAATTCCATGGAGACCCCCTGGAACTGCTCTGCAGTTTTACTCCAACC
TACACAATGCCGAAACCTCTTCTTGGGTGAATTTGGTATTGTGGTGTGTGGTCTTGGTGCTCCA
GGTCGTGCAGTGGAAGTCTGAAGCCACCCCACACCGGCCTCTGGAGAGGGGTGACCCTGAGTGG
AGCTCTGAGACAGATGCTCTCTTTGGGCCACGCCTTTCCCATTCCTGAAGAATAACCAGAGTGC
TTCCTGCAGCCAAAGACTCCATGCCCAAGTGCCTGCAATCCTCTTGCCCCCACAAGGCCCTGTT
TATGTTGGGAGTCTTAGTTTTCCTTTCAGGGGGGAAACGTAATGACAGGACCCCCTCCTCCTCT
TCCTACAGCTGTTTTTGTACCAAAATATTATATTACTGTCTTCA

hide sequence

RefSeq Acc Id:

XM_037999184 ⟹ XP_037855112

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666038	108,456,119 - 108,458,713 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007993388	(Get FASTA)	NCBI Sequence Viewer
	XP_037855112	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000003011
	ENSCSAP00000003011.1

RefSeq Acc Id:	XP_007993388 ⟸ XM_007995197
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9R322 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000003011 ⟸ ENSCSAT00000004766

RefSeq Acc Id:	XP_037855112 ⟸ XM_037999184
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000006726	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000004766.1	UniProtKB/TrEMBL
InterPro	TMEM179B	UniProtKB/TrEMBL
KEGG Report	csab:103233876	UniProtKB/TrEMBL
NCBI Gene	TMEM179B	ENTREZGENE
PANTHER	PTHR31056	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 179B	UniProtKB/TrEMBL
UniProt	A0A0D9R322	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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