CENPU (centromere protein U) - Rat Genome Database

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Gene: CENPU (centromere protein U) Chlorocebus sabaeus
Analyze
Symbol: CENPU
Name: centromere protein U
RGD ID: 18721343
Description: INVOLVED IN chordate embryonic development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17130,653,805 - 130,697,329 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7130,653,967 - 130,697,233 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037110,905,743 - 110,949,857 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CENPU
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17130,653,805 - 130,697,329 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7130,653,967 - 130,697,233 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037110,905,743 - 110,949,857 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CENPU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384184,694,085 - 184,734,096 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4184,694,085 - 184,734,130 (-)EnsemblGRCh38hg38GRCh38
GRCh374185,615,239 - 185,655,250 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364185,852,230 - 185,892,280 (-)NCBINCBI36Build 36hg18NCBI36
Build 344185,990,384 - 186,030,435NCBI
Celera4182,944,051 - 182,984,129 (-)NCBICelera
Cytogenetic Map4q35.1NCBI
HuRef4181,368,861 - 181,408,931 (-)NCBIHuRef
CHM1_14185,591,743 - 185,631,801 (-)NCBICHM1_1
T2T-CHM13v2.04188,037,836 - 188,077,855 (-)NCBIT2T-CHM13v2.0
Cenpu
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39847,005,054 - 47,033,603 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl847,005,063 - 47,033,042 (+)EnsemblGRCm39 Ensembl
GRCm38846,552,019 - 46,580,568 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl846,552,028 - 46,580,007 (+)EnsemblGRCm38mm10GRCm38
MGSCv37847,637,423 - 47,664,938 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36848,050,886 - 48,078,401 (+)NCBIMGSCv36mm8
Celera849,234,603 - 49,262,160 (+)NCBICelera
Cytogenetic Map8B1.1NCBI
cM Map826.38NCBI
Cenpu
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81652,448,446 - 52,471,662 (-)NCBIGRCr8
mRatBN7.21645,715,821 - 45,739,038 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1645,714,294 - 45,738,823 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1651,114,501 - 51,137,750 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01654,482,035 - 54,505,251 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01649,753,874 - 49,777,123 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01648,898,032 - 48,921,248 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1648,897,982 - 48,921,242 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01648,613,429 - 48,636,501 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41648,997,465 - 49,020,684 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1643,718,864 - 43,742,055 (-)NCBICelera
Cytogenetic Map16q11NCBI
Cenpu
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540324,245,185 - 24,279,734 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540324,245,197 - 24,278,631 (+)NCBIChiLan1.0ChiLan1.0
CENPU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23182,419,192 - 182,458,371 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14182,781,053 - 182,820,189 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04176,858,733 - 176,899,867 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14189,084,456 - 189,124,453 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4189,085,238 - 189,124,453 (-)Ensemblpanpan1.1panPan2
CENPU
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11645,821,111 - 45,857,636 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1645,820,667 - 45,857,647 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1646,314,028 - 46,350,526 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01648,036,645 - 48,073,177 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1648,036,361 - 48,073,188 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11646,003,824 - 46,038,488 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01646,616,630 - 46,653,120 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01646,749,139 - 46,785,853 (+)NCBIUU_Cfam_GSD_1.0
Cenpu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494333,573,524 - 33,612,324 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365544,500,486 - 4,536,239 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365544,497,675 - 4,536,274 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1545,818,951 - 45,851,441 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11545,818,562 - 45,851,461 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21552,430,858 - 52,463,884 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cenpu
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476915,450,423 - 15,491,393 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CENPU
935 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000001021   ⟹   ENSCSAP00000015046
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl7130,653,967 - 130,697,233 (-)Ensembl
RefSeq Acc Id: XM_008000399   ⟹   XP_007998590
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17130,653,805 - 130,697,329 (-)NCBI
Vero_WHO_p1.0NW_023666037110,905,743 - 110,949,857 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008000401   ⟹   XP_007998592
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17130,653,814 - 130,697,238 (-)NCBI
Vero_WHO_p1.0NW_023666037110,905,743 - 110,949,857 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008000402   ⟹   XP_007998593
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17130,653,814 - 130,697,238 (-)NCBI
Vero_WHO_p1.0NW_023666037110,905,743 - 110,949,857 (-)NCBI
Sequence:
RefSeq Acc Id: XR_498339
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.17130,653,814 - 130,697,329 (-)NCBI
Vero_WHO_p1.0NW_023666037110,905,743 - 110,949,857 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007998590 (Get FASTA)   NCBI Sequence Viewer  
  XP_007998592 (Get FASTA)   NCBI Sequence Viewer  
  XP_007998593 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015046
  ENSCSAP00000015046.1
RefSeq Acc Id: XP_007998590   ⟸   XM_008000399
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S2F7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998593   ⟸   XM_008000402
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007998592   ⟸   XM_008000401
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000015046   ⟸   ENSCSAT00000001021


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002994 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001021.1 UniProtKB/TrEMBL
InterPro CENP-U UniProtKB/TrEMBL
KEGG Report csab:103236616 UniProtKB/TrEMBL
NCBI Gene CENPU ENTREZGENE
PANTHER CENTROMERE PROTEIN U UniProtKB/TrEMBL
  CENTROMERE PROTEIN U UniProtKB/TrEMBL
Pfam CENP-U UniProtKB/TrEMBL
UniProt A0A0D9S2F7 ENTREZGENE, UniProtKB/TrEMBL