CHN1 (chimerin 1) - Rat Genome Database

Name: CHN1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: CHN1 (chimerin 1) Chlorocebus sabaeus

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Symbol:

CHN1

Name:

chimerin 1

RGD ID:

18717227

Description:

ENCODES a protein that exhibits ephrin receptor binding (inferred); GTPase activator activity (inferred); metal ion binding (inferred); INVOLVED IN ephrin receptor signaling pathway (inferred); motor neuron axon guidance (inferred); regulation of axonogenesis (inferred); ASSOCIATED WITH autosomal dominant Robinow syndrome 2 (ortholog); Dandy-Walker syndrome (ortholog); Duane retraction syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

N-chimaerin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CHN1 (chimerin 1)	NCBI	Ortholog
Mus musculus (house mouse):	Chn1 (chimerin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Chn1 (chimerin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Chn1 (chimerin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CHN1 (chimerin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CHN1 (chimerin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Chn1 (chimerin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CHN1 (chimerin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Chn1 (chimerin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	60,334,829 - 60,540,309 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	60,331,214 - 60,488,785 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	139,071,168 - 139,270,190 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant Robinow syndrome 2 (ISO)

Dandy-Walker syndrome (ISO)

Duane retraction syndrome (ISO)

Duane Retraction Syndrome 2 (ISO)

genetic disease (ISO)

Moebius syndrome (ISO)

split hand-foot malformation 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ephrin receptor signaling pathway (IEA)

motor neuron axon guidance (IEA)

regulation of axonogenesis (IEA)

regulation of small GTPase mediated signal transduction (IEA)

signal transduction (IEA)

Molecular Function

ephrin receptor binding (IEA)

GTPase activator activity (IEA)

metal ion binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CHN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	60,334,829 - 60,540,309 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	60,331,214 - 60,488,785 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	139,071,168 - 139,270,190 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CHN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	174,798,809 - 175,005,381 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	174,798,809 - 175,005,381 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	175,663,537 - 175,870,109 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	175,372,338 - 175,578,361 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	175,489,740 - 175,695,461	NCBI
Celera	2	169,277,589 - 169,483,716 (-)	NCBI		Celera
Cytogenetic Map	2	q31.1	NCBI
HuRef	2	167,544,975 - 167,750,776 (-)	NCBI		HuRef
CHM1_1	2	175,670,072 - 175,876,103 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	175,287,561 - 175,494,136 (-)	NCBI		T2T-CHM13v2.0

Chn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	73,441,004 - 73,605,723 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	73,441,004 - 73,605,690 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	73,610,660 - 73,775,367 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	73,610,660 - 73,775,346 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	73,448,717 - 73,613,403 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	73,411,584 - 73,461,205 (-)	NCBI		MGSCv36	mm8
Celera	2	75,297,418 - 75,408,740 (-)	NCBI		Celera
Cytogenetic Map	2	C3	NCBI
cM Map	2	43.78	NCBI

Chn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	78,917,329 - 79,084,040 (-)	NCBI		GRCr8
mRatBN7.2	3	58,509,822 - 58,676,462 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	58,510,536 - 58,676,490 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	61,903,426 - 62,070,497 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	70,487,079 - 70,654,162 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	68,252,108 - 68,419,189 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	60,512,360 - 60,668,413 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	60,513,077 - 60,611,924 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	66,992,186 - 67,147,012 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	56,144,053 - 56,186,665 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	56,040,424 - 56,083,037 (-)	NCBI
Celera	3	58,037,858 - 58,080,474 (-)	NCBI		Celera
Cytogenetic Map	3	q23	NCBI

Chn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955449	574,407 - 635,566 (+)	NCBI	ChiLan1.0	ChiLan1.0

CHN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	77,461,632 - 77,672,824 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	77,476,538 - 77,685,703 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	62,074,405 - 62,283,013 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	179,527,971 - 179,694,524 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

CHN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	18,785,470 - 18,990,409 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	18,786,073 - 18,980,993 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	18,794,209 - 18,999,749 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	18,922,240 - 19,128,093 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	18,921,400 - 19,118,599 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	18,998,481 - 19,204,056 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	18,997,206 - 19,202,881 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	19,107,993 - 19,313,290 (-)	NCBI		UU_Cfam_GSD_1.0

Chn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	135,953,039 - 136,123,796 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936509	4,506,311 - 4,678,313 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936509	4,507,042 - 4,677,681 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	80,730,716 - 80,927,746 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	80,731,243 - 80,927,746 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	89,940,525 - 90,059,474 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Chn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624787	11,989,587 - 12,176,925 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007965409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007965410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007965411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007965412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007965413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007965414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038001906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038001907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038001908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000012627 ⟹ ENSCSAP00000010659

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	10	60,331,214 - 60,488,785 (-)	Ensembl

RefSeq Acc Id:

XM_007965409 ⟹ XP_007963600

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	10	60,334,829 - 60,540,243 (-)	NCBI
Vero_WHO_p1.0	NW_023666040	139,071,168 - 139,270,190 (+)	NCBI

Sequence:

show sequence

CGGCGAGCAGGCGGCGAGCGCCTTTACAATGGCCCTGACCCTGTTTGATACAGATGAATATAGA
CCTCCTGTTTGGAAATCTTACTTATATCAGCTACAACAGGAAGCCCCTCATCCTCGAAGAATTA
CCTGTACTTGCGAGGTAGAAAACAGACCAAAGTATTATGGAAGAGAGTTTCATGGCATGATCTC
CAGAGAAGCAGCCGACCAGCTCTTGATTGTGGCTGAGGGGAGCTACCTCATCCGGGAGAGCCAG
CGGCAGCCAGGGACCTACACTTTGGCTTTAAGATTTGGAAGTCAAACCAGAAACTTCAGGCTCT
ACTACGATGGCAAGCACTTTGTTGGGGAGAAACGCTTTGAGTCCATCCACGATCTGGTGACTGA
TGGCTTGATTACTCTCTATATTGAAACCAAGGCAGCAGAATACATTGCCAAGATGACGATAAAC
CCAATATATGAGCACATAGGATACACAACCTTAAACAGAGAGCCAGCATACAAAAAACATATGC
CAGTCCTGAAAGAGACACATGATGAGAGAGATTCTACAGGCCAGGATGGGGTGTCAGAGAAAAG
GTTGACATCACTTGTTAGAAGAGCAACTCTGAAAGAAAACGAGCAAATTCCAAAATATGAAAAG
ATTCACAATTTCAAGGTCCATACATTCAGAGGGCCACACTGGTGTGAATACTGTGCCAACTTTA
TGTGGGGTCTCATTGCTCAGGGAGTGAAATGTGCAGATTGTGGTTTGAATGTTCATAAGCAGTG
TTCCAAGATGGTCCCAAATGACTGTAAACCAGACTTGAAGCATGTCAAAAAGGTGTACAGCTGT
GACCTTACAACGCTCGTGAAAGCACACACCACTAAGCGGCCAATGGTAGTAGACATGTGCATCA
GAGAGATTGAGTCTAGAGGTCTTAATTCTGAAGGACTATACCGAGTATCAGGATTTAGTGACCT
AATTGAAGATGTCAAGATGGCTTTCGACAGAGATGGTGAGAAGGCAGATATTTCTGTGAACATG
TATGAAGATATCAACATTATCACTGGTGCACTTAAACTGTACTTCAGGGATTTGCCAATTCCAC
TCATTACATATGATGCCTACCCTAAGTTTATAGAATCTGCCAAAATTATGGATCCTGATGAGCA
ATTGGAAACCCTTCATGAAGCACTGAAACTACTGCCACCTGCTCACTGCGAAACCCTCCGGTAC
CTCATGGCACATCTAAAGAGAGTGACCCTCCACGAAAAGGAGAATCTTATGAATGCAGAGAACC
TTGGAATCGTCTTTGGACCCACCCTTATGAGATCTCCAGAACTAGATGCCATGGCTGCATTGAA
TGATATACGATATCAGAGACTGGTGGTGGAGCTGCTTATCAAAAACGAAGACATTTTATTTTAA
ATTTTTAATTTGAGGGGAAAAGAAATGTTTACAGATGAAGGAATGTTTTATAGTAATTTAATTT
GCTCCTGTAGCTGCATTATTTCTTGATTAGAGGTTTGGGCATATAACCAGATTAAAGTGAAGGA
ACTTTCTGTTGTTTTTGTAGCACCACTCAGCTGTCTTGTAAAACAGTGAGCACACGCTTTCCGG
TTCTAGTAATCCTGGGTGTTTATCACGTTCAGAGAAACTCAAGCTATTGCATGATTAGCCCCCT
ATCTGGCAAGGAAACCCCATACAGAAGAAACAACAAACCTGCGCCTGCACCGCCTCTGCGTCCT
GGGTAGTCTGTGCTTGTAATCCAGCATGTTTCACAGAGTAAGCCTGTTGTGACTTTGCTTTTGG
GGTCTATGTCATTGGTTTCTGATGCTTGTACAAACATGCACACACAAATGGATAAAACAGCACC
TCTGGCTGTTGCATTACCATAGACCATATCACATGCCTACATTTTGCAAATGATTTCTGGTTTC
TCTTAGTTCTTCTCTAACATAGTACTTTCTTTCCAGCAAAAGCAAAAGGTGTTTTCAGATTTGT
TACTTTAATAAGTTATCCATACCAATAAAAAGTGTACAACACAGCATTTTCTGTTAAATTAT

hide sequence

RefSeq Acc Id:

XM_007965412 ⟹ XP_007963603

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	10	60,334,829 - 60,540,243 (-)	NCBI
Vero_WHO_p1.0	NW_023666040	139,071,168 - 139,270,190 (+)	NCBI

Sequence:

show sequence

CGGCGAGCAGGCGGCGAGCGCCTTTACAATGGCCCTGACCCTGTTTGATACAGATGAATATAGA
CCTCCTGTTTGGAAATCTTACTTATATCAGCTACAACAGGAAGCCCCTCATCCTCGAAGAATTA
CCTGTACTTGCGAGGTAGAAAACAGACCAAAGTATTATGGAAGAGAGTTTCATGGCATGATCTC
CAGAGAAGCAGCCGACCAGCTCTTGATTGTGGCTGAGGGGAGCTACCTCATCCGGGAGAGCCAG
CGGCAGCCAGGGACCTACACTTTGGCTTTAAGATTTGGAAGTCAAACCAGAAACTTCAGGCTCT
ACTACGATGGCAAGCACTTTGTTGGGGAGAAACGCTTTGAGTCCATCCACGATCTGGTGACTGA
TGGCTTGATTACTCTCTATATTGAAACCAAGGCAGCAGAATACATTGCCAAGATGACGATAAAC
CCAATATATGAGCACATAGGATACACAACCTTAAACAGAGAGCCAGCATACAAAAAACATATGC
CAGTCCTGAAAGAGACACATGATGAGAGAGATTCTACAGGCCAGGATGGGGTGTCAGAGAAAAG
GGTCCATACATTCAGAGGGCCACACTGGTGTGAATACTGTGCCAACTTTATGTGGGGTCTCATT
GCTCAGGGAGTGAAATGTGCAGATTGTGGTTTGAATGTTCATAAGCAGTGTTCCAAGATGGTCC
CAAATGACTGTAAACCAGACTTGAAGCATGTCAAAAAGGTGTACAGCTGTGACCTTACAACGCT
CGTGAAAGCACACACCACTAAGCGGCCAATGGTAGTAGACATGTGCATCAGAGAGATTGAGTCT
AGAGGTCTTAATTCTGAAGGACTATACCGAGTATCAGGATTTAGTGACCTAATTGAAGATGTCA
AGATGGCTTTCGACAGAGATGGTGAGAAGGCAGATATTTCTGTGAACATGTATGAAGATATCAA
CATTATCACTGGTGCACTTAAACTGTACTTCAGGGATTTGCCAATTCCACTCATTACATATGAT
GCCTACCCTAAGTTTATAGAATCTGCCAAAATTATGGATCCTGATGAGCAATTGGAAACCCTTC
ATGAAGCACTGAAACTACTGCCACCTGCTCACTGCGAAACCCTCCGGTACCTCATGGCACATCT
AAAGAGAGTGACCCTCCACGAAAAGGAGAATCTTATGAATGCAGAGAACCTTGGAATCGTCTTT
GGACCCACCCTTATGAGATCTCCAGAACTAGATGCCATGGCTGCATTGAATGATATACGATATC
AGAGACTGGTGGTGGAGCTGCTTATCAAAAACGAAGACATTTTATTTTAAATTTTTAATTTGAG
GGGAAAAGAAATGTTTACAGATGAAGGAATGTTTTATAGTAATTTAATTTGCTCCTGTAGCTGC
ATTATTTCTTGATTAGAGGTTTGGGCATATAACCAGATTAAAGTGAAGGAACTTTCTGTTGTTT
TTGTAGCACCACTCAGCTGTCTTGTAAAACAGTGAGCACACGCTTTCCGGTTCTAGTAATCCTG
GGTGTTTATCACGTTCAGAGAAACTCAAGCTATTGCATGATTAGCCCCCTATCTGGCAAGGAAA
CCCCATACAGAAGAAACAACAAACCTGCGCCTGCACCGCCTCTGCGTCCTGGGTAGTCTGTGCT
TGTAATCCAGCATGTTTCACAGAGTAAGCCTGTTGTGACTTTGCTTTTGGGGTCTATGTCATTG
GTTTCTGATGCTTGTACAAACATGCACACACAAATGGATAAAACAGCACCTCTGGCTGTTGCAT
TACCATAGACCATATCACATGCCTACATTTTGCAAATGATTTCTGGTTTCTCTTAGTTCTTCTC
TAACATAGTACTTTCTTTCCAGCAAAAGCAAAAGGTGTTTTCAGATTTGTTACTTTAATAAGTT
ATCCATACCAATAAAAAGTGTACAACACAGCATTTTCTGTTAAATTAT

hide sequence

RefSeq Acc Id:

XM_007965413 ⟹ XP_007963604

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	10	60,334,829 - 60,488,779 (-)	NCBI
Vero_WHO_p1.0	NW_023666040	139,071,168 - 139,270,190 (+)	NCBI

Sequence:

show sequence

ATGAATATAGACCTCCTGTTTGGAAATCTTACTGTAGAAAACAGACCAAAGTATTATGGAAGAG
AGTTTCATGGCATGATCTCCAGAGAAGCAGCCGACCAGCTCTTGATTGTGGCTGAGGGGAGCTA
CCTCATCCGGGAGAGCCAGCGGCAGCCAGGGACCTACACTTTGGCTTTAAGATTTGGAAGTCAA
ACCAGAAACTTCAGGCTCTACTACGATGGCAAGCACTTTGTTGGGGAGAAACGCTTTGAGTCCA
TCCACGATCTGGTGACTGATGGCTTGATTACTCTCTATATTGAAACCAAGGCAGCAGAATACAT
TGCCAAGATGACGATAAACCCAATATATGAGCACATAGGATACACAACCTTAAACAGAGAGCCA
GCATACAAAAAACATATGCCAGTCCTGAAAGAGACACATGATGAGAGAGATTCTACAGGCCAGG
ATGGGGTGTCAGAGAAAAGGTTGACATCACTTGTTAGAAGAGCAACTCTGAAAGAAAACGAGCA
AATTCCAAAATATGAAAAGATTCACAATTTCAAGGTCCATACATTCAGAGGGCCACACTGGTGT
GAATACTGTGCCAACTTTATGTGGGGTCTCATTGCTCAGGGAGTGAAATGTGCAGATTGTGGTT
TGAATGTTCATAAGCAGTGTTCCAAGATGGTCCCAAATGACTGTAAACCAGACTTGAAGCATGT
CAAAAAGGTGTACAGCTGTGACCTTACAACGCTCGTGAAAGCACACACCACTAAGCGGCCAATG
GTAGTAGACATGTGCATCAGAGAGATTGAGTCTAGAGGTCTTAATTCTGAAGGACTATACCGAG
TATCAGGATTTAGTGACCTAATTGAAGATGTCAAGATGGCTTTCGACAGAGATGGTGAGAAGGC
AGATATTTCTGTGAACATGTATGAAGATATCAACATTATCACTGGTGCACTTAAACTGTACTTC
AGGGATTTGCCAATTCCACTCATTACATATGATGCCTACCCTAAGTTTATAGAATCTGCCAAAA
TTATGGATCCTGATGAGCAATTGGAAACCCTTCATGAAGCACTGAAACTACTGCCACCTGCTCA
CTGCGAAACCCTCCGGTACCTCATGGCACATCTAAAGAGAGTGACCCTCCACGAAAAGGAGAAT
CTTATGAATGCAGAGAACCTTGGAATCGTCTTTGGACCCACCCTTATGAGATCTCCAGAACTAG
ATGCCATGGCTGCATTGAATGATATACGATATCAGAGACTGGTGGTGGAGCTGCTTATCAAAAA
CGAAGACATTTTATTTTAAATTTTTAATTTGAGGGGAAAAGAAATGTTTACAGATGAAGGAATG
TTTTATAGTAATTTAATTTGCTCCTGTAGCTGCATTATTTCTTGATTAGAGGTTTGGGCATATA
ACCAGATTAAAGTGAAGGAACTTTCTGTTGTTTTTGTAGCACCACTCAGCTGTCTTGTAAAACA
GTGAGCACACGCTTTCCGGTTCTAGTAATCCTGGGTGTTTATCACGTTCAGAGAAACTCAAGCT
ATTGCATGATTAGCCCCCTATCTGGCAAGGAAACCCCATACAGAAGAAACAACAAACCTGCGCC
TGCACCGCCTCTGCGTCCTGGGTAGTCTGTGCTTGTAATCCAGCATGTTTCACAGAGTAAGCCT
GTTGTGACTTTGCTTTTGGGGTCTATGTCATTGGTTTCTGATGCTTGTACAAACATGCACACAC
AAATGGATAAAACAGCACCTCTGGCTGTTGCATTACCATAGACCATATCACATGCCTACATTTT
GCAAATGATTTCTGGTTTCTCTTAGTTCTTCTCTAACATAGTACTTTCTTTCCAGCAAAAGCAA
AAGGTGTTTTCAGATTTGTTACTTTAATAAGTTATCCATACCAATAAAAAGTGTACAACACAGC
ATTTTCTGTTAAATTAT

hide sequence

RefSeq Acc Id:

XM_038001906 ⟹ XP_037857834

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666040	139,071,168 - 139,270,190 (+)	NCBI

RefSeq Acc Id:

XM_038001907 ⟹ XP_037857835

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666040	139,193,144 - 139,270,190 (+)	NCBI

RefSeq Acc Id:

XM_038001908 ⟹ XP_037857836

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666040	139,223,792 - 139,270,190 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007963600	(Get FASTA)	NCBI Sequence Viewer
	XP_007963603	(Get FASTA)	NCBI Sequence Viewer
	XP_007963604	(Get FASTA)	NCBI Sequence Viewer
	XP_037857834	(Get FASTA)	NCBI Sequence Viewer
	XP_037857835	(Get FASTA)	NCBI Sequence Viewer
	XP_037857836	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000010659
	ENSCSAP00000010659.1

RefSeq Acc Id:	XP_007963603 ⟸ XM_007965412
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_007963600 ⟸ XM_007965409
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_007963604 ⟸ XM_007965413
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9RPX0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000010659 ⟸ ENSCSAT00000012627

RefSeq Acc Id:	XP_037857834 ⟸ XM_038001906
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_037857835 ⟸ XM_038001907
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_037857836 ⟸ XM_038001908
- Peptide Label:	isoform X6

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000014539	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000012627.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.555.10	UniProtKB/TrEMBL
	3.30.505.10	UniProtKB/TrEMBL
	3.30.60.20	UniProtKB/TrEMBL
InterPro	C1-like_sf	UniProtKB/TrEMBL
	Chimaerin_SH2	UniProtKB/TrEMBL
	CHN1/CHN2	UniProtKB/TrEMBL
	DAG/PE-bd	UniProtKB/TrEMBL
	PE/DAG-bd	UniProtKB/TrEMBL
	Rho-type_GAP	UniProtKB/TrEMBL
	Rho_GTPase_activation_prot	UniProtKB/TrEMBL
	RhoGAP_chimaerin	UniProtKB/TrEMBL
	RhoGAP_dom	UniProtKB/TrEMBL
	SH2	UniProtKB/TrEMBL
	SH2_dom_sf	UniProtKB/TrEMBL
NCBI Gene	CHN1	ENTREZGENE
PANTHER	CHIMERIN FAMILY MEMBER	UniProtKB/TrEMBL
	N-CHIMAERIN	UniProtKB/TrEMBL
Pfam	C1_1	UniProtKB/TrEMBL
	RhoGAP	UniProtKB/TrEMBL
	SH2	UniProtKB/TrEMBL
PIRSF	N-chimaerin	UniProtKB/TrEMBL
PRINTS	DAGPEDOMAIN	UniProtKB/TrEMBL
PROSITE	RHOGAP	UniProtKB/TrEMBL
	SH2	UniProtKB/TrEMBL
	ZF_DAG_PE_1	UniProtKB/TrEMBL
	ZF_DAG_PE_2	UniProtKB/TrEMBL
SMART	RhoGAP	UniProtKB/TrEMBL
	SH2	UniProtKB/TrEMBL
	SM00109	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48350	UniProtKB/TrEMBL
	SSF55550	UniProtKB/TrEMBL
	SSF57889	UniProtKB/TrEMBL
UniProt	A0A0D9RPX0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM