CBLN4 (cerebellin 4 precursor) - Rat Genome Database

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Gene: CBLN4 (cerebellin 4 precursor) Chlorocebus sabaeus
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Symbol: CBLN4
Name: cerebellin 4 precursor
RGD ID: 18715821
Description: INVOLVED IN protein secretion (ortholog); FOUND IN glutamatergic synapse (ortholog); synaptic cleft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cerebellin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.128,111,028 - 8,120,536 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl28,112,998 - 8,119,620 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605056,198,660 - 56,207,638 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CBLN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.128,111,028 - 8,120,536 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl28,112,998 - 8,119,620 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605056,198,660 - 56,207,638 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CBLN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382055,997,357 - 56,005,519 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2055,997,357 - 56,005,519 (-)EnsemblGRCh38hg38GRCh38
GRCh372054,572,413 - 54,580,575 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362054,005,903 - 54,013,419 (-)NCBINCBI36Build 36hg18NCBI36
Build 342054,005,902 - 54,013,419NCBI
Celera2051,311,804 - 51,319,320 (-)NCBICelera
Cytogenetic Map20q13.2NCBI
HuRef2051,353,635 - 51,361,750 (-)NCBIHuRef
CHM1_12054,473,476 - 54,481,591 (-)NCBICHM1_1
T2T-CHM13v2.02057,772,334 - 57,780,496 (-)NCBIT2T-CHM13v2.0
Cbln4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392171,878,256 - 171,885,386 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2171,878,153 - 171,885,386 (-)EnsemblGRCm39 Ensembl
GRCm382172,036,336 - 172,043,466 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2172,036,233 - 172,043,466 (-)EnsemblGRCm38mm10GRCm38
MGSCv372171,861,836 - 171,868,966 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362171,727,541 - 171,734,671 (-)NCBIMGSCv36mm8
Celera2177,986,635 - 177,993,764 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map294.74NCBI
Cbln4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83181,218,046 - 181,225,600 (-)NCBIGRCr8
mRatBN7.23160,799,587 - 160,807,143 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3160,799,587 - 160,807,143 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3164,611,908 - 164,619,474 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03173,110,859 - 173,118,425 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03170,852,717 - 170,860,285 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03170,033,166 - 170,040,953 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3170,033,166 - 170,040,953 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03176,112,391 - 176,120,178 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43162,913,936 - 162,921,642 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3160,005,725 - 160,013,278 (-)NCBICelera
Cytogenetic Map3q42NCBI
Cbln4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554453,209,006 - 3,216,914 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554453,209,006 - 3,216,679 (+)NCBIChiLan1.0ChiLan1.0
CBLN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22161,738,300 - 61,747,452 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12061,731,418 - 61,740,574 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02052,330,743 - 52,339,896 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12053,549,273 - 53,557,294 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2053,548,083 - 53,557,294 (-)Ensemblpanpan1.1panPan2
CBLN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12441,314,211 - 41,321,624 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2441,171,746 - 41,320,612 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2440,508,674 - 40,569,959 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02441,971,259 - 42,033,235 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2441,971,214 - 42,032,599 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12441,211,732 - 41,272,923 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02441,348,777 - 41,410,430 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02442,007,876 - 42,069,825 (-)NCBIUU_Cfam_GSD_1.0
CBLN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1756,674,872 - 56,683,261 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11756,674,872 - 56,683,261 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21763,734,700 - 63,743,081 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Cbln4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624790538,490 - 546,586 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624790540,084 - 555,128 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 17 33 33 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008013590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000013430   ⟹   ENSCSAP00000011429
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl28,112,998 - 8,119,620 (+)Ensembl
RefSeq Acc Id: XM_008013590   ⟹   XP_008011781
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.128,111,028 - 8,120,536 (+)NCBI
Vero_WHO_p1.0NW_02366605056,198,660 - 56,207,638 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008011781 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011429
  ENSCSAP00000011429.1
RefSeq Acc Id: XP_008011781   ⟸   XM_008013590
- UniProtKB: A0A0D9RS40 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000011429   ⟸   ENSCSAT00000013430


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015334 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013430.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro C1q_dom UniProtKB/TrEMBL
  Cerebellin_Synaptic_Org UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
KEGG Report csab:103243931 UniProtKB/TrEMBL
NCBI Gene CBLN4 ENTREZGENE
PANTHER CEREBELLIN-4 UniProtKB/TrEMBL
  CEREBELLIN-RELATED UniProtKB/TrEMBL
Pfam C1q UniProtKB/TrEMBL
PRINTS COMPLEMNTC1Q UniProtKB/TrEMBL
PROSITE C1Q UniProtKB/TrEMBL
SMART C1Q UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/TrEMBL
UniProt A0A0D9RS40 ENTREZGENE, UniProtKB/TrEMBL