NTN3 (netrin 3) - Rat Genome Database

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Gene: NTN3 (netrin 3) Chlorocebus sabaeus
Analyze
Symbol: NTN3
Name: netrin 3
RGD ID: 18712112
Description: ENCODES a protein that exhibits signaling receptor binding (inferred); INVOLVED IN animal organ morphogenesis (inferred); dendrite development (inferred); motor neuron axon guidance (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); idiopathic generalized epilepsy (ortholog); FOUND IN basement membrane (inferred); extracellular region (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: netrin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,349,614 - 2,353,197 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,350,797 - 2,353,184 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606828,684,323 - 28,687,245 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
NTN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,349,614 - 2,353,197 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,350,797 - 2,353,184 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606828,684,323 - 28,687,245 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
NTN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,471,297 - 2,474,145 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,471,297 - 2,474,145 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,521,298 - 2,524,146 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,461,501 - 2,464,147 (+)NCBINCBI36Build 36hg18NCBI36
Build 34162,461,500 - 2,464,147NCBI
Celera162,735,875 - 2,738,521 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,446,819 - 2,449,530 (+)NCBIHuRef
CHM1_1162,521,394 - 2,524,040 (+)NCBICHM1_1
T2T-CHM13v2.0162,493,427 - 2,496,275 (+)NCBIT2T-CHM13v2.0
Ntn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,422,805 - 24,428,361 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,422,822 - 24,428,505 (-)EnsemblGRCm39 Ensembl
GRCm381724,203,831 - 24,209,387 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,203,848 - 24,209,531 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,340,776 - 24,346,332 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361723,931,431 - 23,936,987 (-)NCBIMGSCv36mm8
Celera1724,709,264 - 24,714,824 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.31NCBI
Ntn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,741,459 - 13,744,555 (-)NCBIGRCr8
mRatBN7.21013,236,905 - 13,240,001 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,236,905 - 13,240,001 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,981,701 - 17,984,797 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,470,540 - 17,473,636 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,969,384 - 12,972,480 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,577,725 - 13,580,821 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,577,725 - 13,580,821 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,393,760 - 13,396,856 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,457,653 - 13,460,749 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,459,137 - 13,460,207 (-)NCBI
Celera1012,922,863 - 12,925,959 (-)NCBICelera
Cytogenetic Map10q12NCBI
Ntn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,838,076 - 14,840,857 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,838,076 - 14,840,857 (-)NCBIChiLan1.0ChiLan1.0
NTN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,966,446 - 2,976,169 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,747,344 - 6,756,826 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,323,148 - 1,330,713 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,570,954 - 2,574,943 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,571,072 - 2,573,173 (+)Ensemblpanpan1.1panPan2
NTN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,558,942 - 38,561,437 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,558,150 - 38,561,323 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,797,130 - 39,799,511 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0638,868,001 - 38,870,384 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,868,001 - 38,870,384 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,553,133 - 38,555,514 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,525,757 - 38,528,138 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,001,909 - 39,004,291 (-)NCBIUU_Cfam_GSD_1.0
Ntn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,123,480 - 105,145,788 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366941,582,643 - 1,585,455 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366941,581,322 - 1,585,893 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,572,531 - 39,575,170 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,572,430 - 39,575,717 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,610,519 - 42,629,599 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ntn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824221,724 - 225,260 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624824221,296 - 244,014 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NTN3
19 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007982811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000008583   ⟹   ENSCSAP00000006727
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl52,350,797 - 2,353,184 (+)Ensembl
RefSeq Acc Id: XM_007982811   ⟹   XP_007981002
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.152,349,614 - 2,353,197 (+)NCBI
Vero_WHO_p1.0NW_02366606828,684,323 - 28,687,245 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007981002 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000006727.1
RefSeq Acc Id: XP_007981002   ⟸   XM_007982811
- UniProtKB: A0A0D9RDN8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000006727   ⟸   ENSCSAT00000008583


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010515 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008583.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.120 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro Laminin/Netrin_ECM UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
  Netrin_domain UniProtKB/TrEMBL
  Netrin_module_non-TIMP UniProtKB/TrEMBL
  TIMP-like_OB-fold UniProtKB/TrEMBL
NCBI Gene NTN3 ENTREZGENE
PANTHER NETRIN-3 UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/TrEMBL
Pfam Laminin_EGF UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
  NTR UniProtKB/TrEMBL
PROSITE EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/TrEMBL
  NTR UniProtKB/TrEMBL
SMART C345C UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  LamNT UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF50242 UniProtKB/TrEMBL
UniProt A0A0D9RDN8 ENTREZGENE, UniProtKB/TrEMBL