RAD23B (RAD23 homolog B, nucleotide excision repair protein) - Rat Genome Database

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Gene: RAD23B (RAD23 homolog B, nucleotide excision repair protein) Chlorocebus sabaeus
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Symbol: RAD23B
Name: RAD23 homolog B, nucleotide excision repair protein
RGD ID: 18707415
Description: ENCODES a protein that exhibits DNA damage sensor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); DNA damage response (ortholog); embryonic organ development (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH Craniofacial Abnormalities (ortholog); male infertility (ortholog); Prostatic Neoplasms (ortholog); FOUND IN XPC complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UV excision repair protein RAD23 homolog B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11232,203,501 - 32,250,555 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1232,204,893 - 32,250,570 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603510,428,681 - 10,476,086 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAD23B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11232,203,501 - 32,250,555 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1232,204,893 - 32,250,570 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603510,428,681 - 10,476,086 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RAD23B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389107,283,279 - 107,332,194 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9107,283,137 - 107,332,192 (+)EnsemblGRCh38hg38GRCh38
GRCh379110,045,560 - 110,094,475 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369109,085,365 - 109,134,291 (+)NCBINCBI36Build 36hg18NCBI36
Build 349107,125,098 - 107,174,025NCBI
Celera980,547,624 - 80,596,476 (+)NCBICelera
Cytogenetic Map9q31.2NCBI
HuRef979,647,342 - 79,696,523 (+)NCBIHuRef
CHM1_19110,192,246 - 110,241,111 (+)NCBICHM1_1
T2T-CHM13v2.09119,455,054 - 119,503,938 (+)NCBIT2T-CHM13v2.0
Rad23b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39455,350,042 - 55,392,237 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl455,350,043 - 55,392,237 (+)EnsemblGRCm39 Ensembl
GRCm38455,350,042 - 55,392,237 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl455,350,043 - 55,392,237 (+)EnsemblGRCm38mm10GRCm38
MGSCv37455,362,914 - 55,405,109 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36455,371,157 - 55,412,312 (+)NCBIMGSCv36mm8
Celera455,261,308 - 55,305,783 (+)NCBICelera
Cytogenetic Map4B3NCBI
cM Map429.7NCBI
Rad23b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8574,885,518 - 74,923,621 (+)NCBIGRCr8
mRatBN7.2570,090,232 - 70,128,340 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl570,090,232 - 70,128,319 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx571,970,372 - 72,008,648 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0573,797,196 - 73,835,069 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0573,769,324 - 73,807,197 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0572,103,704 - 72,141,701 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl572,103,704 - 72,141,700 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0576,267,574 - 76,305,117 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4573,256,542 - 73,294,296 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera568,949,047 - 68,987,190 (+)NCBICelera
Cytogenetic Map5q24NCBI
Rad23b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541919,429,970 - 19,460,796 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541919,428,415 - 19,473,181 (-)NCBIChiLan1.0ChiLan1.0
RAD23B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21132,077,773 - 32,125,225 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1932,078,843 - 32,130,941 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0978,433,461 - 78,482,157 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19106,622,383 - 106,670,314 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9106,622,377 - 106,670,317 (+)Ensemblpanpan1.1panPan2
RAD23B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11162,732,989 - 62,778,957 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1162,732,984 - 62,775,978 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1161,131,232 - 61,177,125 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01163,874,392 - 63,920,316 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1163,874,474 - 63,918,434 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11162,397,151 - 62,443,059 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01162,407,466 - 62,453,391 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01163,109,368 - 63,155,283 (+)NCBIUU_Cfam_GSD_1.0
Rad23b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947178,001,694 - 178,041,910 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365595,226,223 - 5,264,491 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365595,224,679 - 5,264,853 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAD23B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1248,448,265 - 248,493,647 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11248,447,991 - 248,493,651 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21278,901,650 - 278,947,022 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rad23b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247584,167,215 - 4,211,487 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247584,168,341 - 4,211,893 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007968490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000009504   ⟹   ENSCSAP00000007619
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1232,204,893 - 32,250,570 (-)Ensembl
RefSeq Acc Id: XM_007968490   ⟹   XP_007966681
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11232,203,501 - 32,250,555 (-)NCBI
Vero_WHO_p1.0NW_02366603510,428,681 - 10,476,086 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007966681 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000007619
  ENSCSAP00000007619.1
RefSeq Acc Id: XP_007966681   ⟸   XM_007968490
- UniProtKB: A0A0D9RG80 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000007619   ⟸   ENSCSAT00000009504


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011420 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009504.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.540 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro Rad23 UniProtKB/TrEMBL
  RAD23A/B_UBA1 UniProtKB/TrEMBL
  STI1_HS-bd UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  XPC-bd UniProtKB/TrEMBL
  XPC-bd_sf UniProtKB/TrEMBL
KEGG Report csab:103219057 UniProtKB/TrEMBL
NCBI Gene RAD23B ENTREZGENE
PANTHER UV EXCISION REPAIR PROTEIN RAD23 UniProtKB/TrEMBL
  UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG B UniProtKB/TrEMBL
Pfam UBA UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
  XPC-binding UniProtKB/TrEMBL
PRINTS RAD23PROTEIN UniProtKB/TrEMBL
PROSITE UBA UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
SMART STI1 UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF101238 UniProtKB/TrEMBL
  SSF46934 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A0D9RG80 ENTREZGENE, UniProtKB/TrEMBL