TERB2 (telomere repeat binding bouquet formation protein 2)

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Gene: TERB2 (telomere repeat binding bouquet formation protein 2) Chlorocebus sabaeus

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Symbol:

TERB2

Name:

telomere repeat binding bouquet formation protein 2

RGD ID:

18686948

Description:

INVOLVED IN double-strand break repair involved in meiotic recombination (ortholog); homologous chromosome pairing at meiosis (ortholog); meiotic attachment of telomere to nuclear envelope (ortholog); ASSOCIATED WITH AGAT deficiency (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN chromosome, telomeric region (inferred); nuclear envelope (inferred); nuclear inner membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

telomere repeats-binding bouquet formation protein 2; uncharacterized protein C15orf43 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	38,226,041 - 38,247,500 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	38,226,687 - 38,247,076 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	102,812,232 - 102,834,156 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

AGAT deficiency (ISO)

Bloom syndrome (ISO)

colorectal cancer (ISO)

spermatogenic failure 3 (ISO)

spermatogenic failure 59 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

double-strand break repair involved in meiotic recombination (IEA,ISO)

homologous chromosome pairing at meiosis (IEA,ISO)

meiotic attachment of telomere to nuclear envelope (IEA,ISO)

meiotic telomere clustering (IEA)

oogenesis (IEA,ISO)

spermatogenesis (IEA,ISO)

synaptonemal complex assembly (IEA,ISO)

Cellular Component

chromosome, telomeric region (IEA)

nuclear envelope (IEA)

nuclear inner membrane (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

TERB2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	38,226,041 - 38,247,500 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	38,226,687 - 38,247,076 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	102,812,232 - 102,834,156 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TERB2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	44,956,687 - 44,979,229 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	44,956,687 - 44,979,229 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	45,248,885 - 45,271,427 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	43,036,192 - 43,058,713 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	22,140,500 - 22,163,021 (+)	NCBI		Celera
Cytogenetic Map	15	q21.1	NCBI
HuRef	15	22,073,117 - 22,095,638 (+)	NCBI		HuRef
CHM1_1	15	45,367,211 - 45,389,738 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	42,764,694 - 42,787,237 (+)	NCBI		T2T-CHM13v2.0

Terb2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	122,016,753 - 122,036,874 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	122,016,753 - 122,036,878 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	122,186,272 - 122,206,393 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	122,186,272 - 122,206,397 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	122,012,008 - 122,032,129 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	121,877,713 - 121,897,834 (+)	NCBI		MGSCv36	mm8
MGSCv36	2	123,157,091 - 123,177,029 (+)	NCBI		MGSCv36	mm8
Celera	2	123,334,753 - 123,355,050 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	60.56	NCBI

Terb2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	129,591,933 - 129,610,293 (+)	NCBI		GRCr8
mRatBN7.2	3	109,138,343 - 109,156,700 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	109,138,343 - 109,156,683 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	112,811,971 - 112,830,403 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	121,407,491 - 121,425,920 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	119,067,867 - 119,086,302 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	114,129,387 - 114,147,943 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	114,129,589 - 114,147,926 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	120,669,991 - 120,688,368 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	108,970,235 - 108,988,403 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	108,036,306 - 108,054,613 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

Terb2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	8,352,685 - 8,371,529 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	8,352,685 - 8,371,576 (-)	NCBI	ChiLan1.0	ChiLan1.0

TERB2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	34,193,326 - 34,221,313 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	38,375,582 - 38,399,487 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	23,904,880 - 23,927,325 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	42,170,633 - 42,191,736 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

TERB2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	11,414,656 - 11,436,119 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	11,414,737 - 11,436,113 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	11,471,083 - 11,492,529 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	11,551,223 - 11,572,700 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	11,551,303 - 11,572,695 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	11,457,569 - 11,479,021 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	11,580,653 - 11,602,099 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	11,699,657 - 11,721,101 (+)	NCBI		UU_Cfam_GSD_1.0

Terb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	89,865,459 - 89,880,383 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	7,713,543 - 7,727,806 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	7,713,562 - 7,728,720 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TERB2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	126,738,663 - 126,768,126 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	126,738,520 - 126,767,948 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	141,338,388 - 141,367,348 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Terb2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	14,203,928 - 14,221,213 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	14,203,324 - 14,220,899 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
69	29	17	30	30	56	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008016771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000007719 ⟹ ENSCSAP00000005887

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	26	38,226,687 - 38,247,076 (-)	Ensembl

RefSeq Acc Id:

XM_008016771 ⟹ XP_008014962

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	26	38,226,041 - 38,247,500 (-)	NCBI
Vero_WHO_p1.0	NW_023666048	102,812,232 - 102,834,156 (+)	NCBI

Sequence:

show sequence

TAAGTCCTCACTTTTAACAGATTCAAAGTGAAACGTTTATAGATGAAATGATGAAATGAATTTT
GCTTCAAAAATAATACTTGATGCTGCAGACTCTGCCCTATGCCTGTACATACACAGCATGGTAA
CTTTGTTAATATTTAGGGTTAACACTCGCCACCTCAAAATTTAAAACAAAGTCAACCAAACAAC
AAAAATCCCTCACCAACTCGAGTCGCTCTCCTCCTCTTATCAGGGCAAGGCTGAGAGGCCCCTA
AGTGATCCGGATAAGCAATCAGAGACTGTCCCTCACCTGAGGGCCTCAGGCCTTTCCCTGCCAT
TTCTCCTGGGAACCAATCATTGAGCTTGGCGTTGGACCTGGAACCAATCAGGGATCTCAGCTCT
GGGGCCTCCTCTCTCACGTCCGCGCAGGCTTGGCGACGCCATGTTTCAAGGGCAGCGCGGTTGG
TTTTGCCGCAGCGTTAGCCGGGATCTGAGGCAATTCTGGGTGGCTGAAGGGGGGACGATCAGTG
ACCCGCGAGCCGCCGACTTCTTGTTCAGCTGTGATGCCTCGCACCCAGACACGCTGAGAATATA
TCAGAGCCTTGATTACATAGAAGATAATGCTACAGTTTTTCATGCCTACTATCTCTCTGCAGTA
GCTAATGCCGAAATAAAAACCTCGGTGGCTTTGGGTCATTTCATTCTTCCTCCTGCTTGCCTGC
ATAAAGAAATAAGAAGAAAAATTGGTAGTTTTATTTGGGAACAAGACCAACATTTTCTGATAGA
AAAGCATGATGAAGTAACACCAAATGAAATAAAGATCCTTAGGGAAAACGGTGAACTAGCAACA
GAGCACAAAAAAGAATTATCCGAAAGCCCAGAAAAGCATTTTATAAGAACTCCAGTTGTAGAAA
AGCAGATGTACTTCCCTCTACAGAATTACCCAGTTAACAACATGGTAACAGGTTATATATCAAT
TGATGCCATGAAGAAATTCCTTGGGGAGCTACATGACTTCATTCCTGGAAGCTCAGGGTATTTG
GCATATCATGTTCAAAATGAAATTAATATGTCTGCTATAAAAAACAAATTGAAGAAGAAATATT
AAATTAAATTGTAAATATCTTGGCATTTATTTTCTATAAAATATTATCGAGATGTGCATAACGT
AAAATGCTCCCTTTTGGTACTGGGGGATAGAGAAGTGGGAAAGAATTTTTCTGTTTCTCAAAAT
ATGTCTTTAGGAAATTCAGAATCATTTTGGTTCTGTGTTTTCACATTTGGGCTGGACTTTTTTT
TCCCTAGCTTATAACAATATGTTCAAATATTCTCAGTGCACAGTTGTTAAGGAGTAATTGTCAT
TAAAATATATTTCATGAGAAGTCTCAATCTCAAACTCTCCATTTCTCAATCCTCCTCCTCCTCT
CTCTCTCTCTCTTTCTATTTCTCTCTTTCTCTTTTCCCTCTCTCTTTTTCTCCTCCCCTTCTCT
CTCCTCTTTCTCTTTCTGTCTGTCAAATGCTCTTTTGGCTTTAACATTCTATTAATTATATTTT
TTCTAGATTGAATACTGTGAATGCTAATTTTTATGATTCTGGTCATCTTATTTTGATTTAAAAA
ATCAGGATGCTAGCTGAGTTCAGAATTACTGTTTCTGACTTGAAACATATGGAGAAAAATATTT
TAATAATTCATATTTCATGTTGGATGGTTTCTCATAATAAATATTTGAAAAGTGACTTAACATA
AA

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Protein Sequences


Protein RefSeqs	XP_008014962	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000005887.1

RefSeq Acc Id:	XP_008014962 ⟸ XM_008016771
- UniProtKB:	A0A0D9RB98 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000005887 ⟸ ENSCSAT00000007719

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000009639	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000007719.1	UniProtKB/TrEMBL
InterPro	TERB2	UniProtKB/TrEMBL
NCBI Gene	TERB2	ENTREZGENE
PANTHER	PTHR35345	UniProtKB/TrEMBL
	TELOMERE REPEATS-BINDING BOUQUET FORMATION PROTEIN 2	UniProtKB/TrEMBL
Pfam	TERB2	UniProtKB/TrEMBL
UniProt	A0A0D9RB98	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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