OTOA (otoancorin) - Rat Genome Database

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Gene: OTOA (otoancorin) Chlorocebus sabaeus
Analyze
Symbol: OTOA
Name: otoancorin
RGD ID: 18676392
Description: INVOLVED IN cell-matrix adhesion (ortholog); multicellular organism growth (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 22 (ortholog); autosomal recessive nonsyndromic deafness 7 (ortholog); FOUND IN apical plasma membrane (inferred); cell surface (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1520,184,525 - 20,278,438 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl520,198,412 - 20,278,433 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660689,587,651 - 9,667,862 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
OTOA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1520,184,525 - 20,278,438 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl520,198,412 - 20,278,433 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660689,587,651 - 9,667,862 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
OTOA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381621,663,968 - 21,760,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1621,663,968 - 21,761,935 (+)EnsemblGRCh38hg38GRCh38
GRCh371621,675,289 - 21,772,050 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361621,597,336 - 21,679,551 (+)NCBINCBI36Build 36hg18NCBI36
Build 341621,623,784 - 21,679,550NCBI
Celera1621,371,583 - 21,424,019 (+)NCBICelera
Cytogenetic Map16p12.2NCBI
HuRef1620,071,671 - 20,153,825 (+)NCBIHuRef
CHM1_11622,692,724 - 22,774,996 (+)NCBICHM1_1
T2T-CHM13v2.01622,456,214 - 22,552,969 (-)NCBIT2T-CHM13v2.0
Otoa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397120,682,647 - 120,762,316 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7120,680,873 - 120,762,320 (+)EnsemblGRCm39 Ensembl
GRCm387121,083,424 - 121,163,093 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7121,081,650 - 121,163,097 (+)EnsemblGRCm38mm10GRCm38
MGSCv377128,226,952 - 128,306,603 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367120,874,587 - 120,954,237 (+)NCBIMGSCv36mm8
Celera7120,996,318 - 121,074,716 (+)NCBICelera
Cytogenetic Map7F2NCBI
cM Map765.07NCBI
Otoa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81185,074,271 - 185,142,149 (+)NCBIGRCr8
mRatBN7.21175,642,978 - 175,710,528 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1175,642,975 - 175,710,435 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01191,029,861 - 191,097,524 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1191,029,861 - 191,097,290 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01197,955,647 - 198,022,686 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41179,944,477 - 180,013,040 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1173,374,030 - 173,440,021 (+)NCBICelera
Cytogenetic Map1q36NCBI
Otoa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554931,154,751 - 1,224,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554931,154,695 - 1,228,997 (+)NCBIChiLan1.0ChiLan1.0
OTOA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21823,736,857 - 23,819,324 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11628,257,503 - 28,339,777 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01615,530,399 - 15,657,565 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11688,025,201 - 88,094,381 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1688,025,201 - 88,091,449 (+)Ensemblpanpan1.1panPan2
OTOA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1623,106,650 - 23,175,159 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl623,106,804 - 23,168,380 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha624,602,084 - 24,670,556 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0623,245,256 - 23,313,869 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1623,047,697 - 23,116,225 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0622,956,980 - 23,029,406 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0623,345,518 - 23,414,053 (-)NCBIUU_Cfam_GSD_1.0
Otoa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344119,288,939 - 119,358,610 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365017,392,616 - 7,456,677 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365017,383,963 - 7,456,470 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OTOA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl323,570,382 - 23,662,480 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1323,570,216 - 23,662,948 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2324,012,548 - 24,055,367 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Otoa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247827,854,594 - 7,915,471 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247827,843,907 - 7,916,259 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 17 33 33 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000004977   ⟹   ENSCSAP00000003217
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl520,198,412 - 20,278,433 (+)Ensembl
RefSeq Acc Id: XM_037989751   ⟹   XP_037845679
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660689,587,651 - 9,667,862 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037845679 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003217.1
Ensembl Acc Id: ENSCSAP00000003217   ⟸   ENSCSAT00000004977
RefSeq Acc Id: XP_037845679   ⟸   XM_037989751
- UniProtKB: A0A0D9R3M8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006969 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004977.1 UniProtKB/TrEMBL
InterPro Stereocilin-rel UniProtKB/TrEMBL
NCBI Gene OTOA ENTREZGENE
PANTHER PTHR23412 UniProtKB/TrEMBL
  PTHR23412:SF18 UniProtKB/TrEMBL
UniProt A0A0D9R3M8 ENTREZGENE, UniProtKB/TrEMBL