ZC3H6 (zinc finger CCCH-type containing 6) - Rat Genome Database

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Gene: ZC3H6 (zinc finger CCCH-type containing 6) Chlorocebus sabaeus
Analyze
Symbol: ZC3H6
Name: zinc finger CCCH-type containing 6
RGD ID: 18663537
Description: ENCODES a protein that exhibits metal ion binding (inferred); RNA binding (inferred); INVOLVED IN negative regulation of DNA-templated transcription (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger CCCH domain-containing protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11415,346,979 - 15,404,781 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1415,374,018 - 15,403,012 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660804,279,307 - 4,337,620 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZC3H6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11415,346,979 - 15,404,781 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1415,374,018 - 15,403,012 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660804,279,307 - 4,337,620 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZC3H6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382112,275,597 - 112,340,059 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2112,275,597 - 112,340,059 (+)EnsemblGRCh38hg38GRCh38
GRCh372113,033,174 - 113,097,636 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362112,749,649 - 112,814,111 (+)NCBINCBI36Build 36hg18NCBI36
Build 342112,783,893 - 112,808,055NCBI
Celera2105,948,735 - 105,989,201 (-)NCBICelera
Cytogenetic Map2q14.1NCBI
HuRef2105,545,486 - 105,610,731 (+)NCBIHuRef
CHM1_12113,037,319 - 113,101,748 (+)NCBICHM1_1
T2T-CHM13v2.02112,702,473 - 112,766,918 (+)NCBIT2T-CHM13v2.0
Zc3h6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392128,809,285 - 128,860,483 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2128,809,322 - 128,860,483 (+)EnsemblGRCm39 Ensembl
GRCm382128,967,402 - 129,018,563 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2128,967,402 - 129,018,563 (+)EnsemblGRCm38mm10GRCm38
MGSCv372128,793,138 - 128,844,299 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362128,693,620 - 128,710,004 (+)NCBIMGSCv36mm8
Celera2130,195,282 - 130,246,471 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map262.63NCBI
Zc3h6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83136,656,116 - 136,717,560 (+)NCBIGRCr8
mRatBN7.23116,203,466 - 116,254,186 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3116,204,197 - 116,253,282 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3120,101,061 - 120,150,173 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03128,696,635 - 128,745,747 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03126,357,125 - 126,406,227 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03121,497,709 - 121,554,131 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3121,499,195 - 121,551,433 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03129,127,650 - 129,127,947 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.03128,460,344 - 128,514,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3115,030,342 - 115,079,289 (+)NCBICelera
Cytogenetic Map3q36NCBI
Zc3h6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554701,825,276 - 1,843,775 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554701,823,469 - 1,876,788 (-)NCBIChiLan1.0ChiLan1.0
ZC3H6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21215,730,823 - 15,798,890 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A15,733,587 - 15,801,524 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A89,670,224 - 89,730,253 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A113,426,672 - 113,467,613 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A113,431,920 - 113,464,603 (+)Ensemblpanpan1.1panPan2
ZC3H6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11736,620,959 - 36,688,438 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1736,621,059 - 36,687,197 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1736,389,997 - 36,457,459 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01737,395,592 - 37,463,350 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1737,395,518 - 37,463,294 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11736,554,659 - 36,601,940 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01736,588,310 - 36,655,756 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01736,801,709 - 36,869,587 (+)NCBIUU_Cfam_GSD_1.0
Zc3h6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629281,992,856 - 82,043,868 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936783903,335 - 936,193 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936783868,147 - 937,180 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZC3H6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl344,085,397 - 44,148,494 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1344,081,283 - 44,148,913 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2345,680,786 - 45,742,641 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Zc3h6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474933,939 - 105,983 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474932,910 - 105,889 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 25 55
Low 11 20 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000014888   ⟹   ENSCSAP00000012847
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1415,374,018 - 15,403,012 (+)Ensembl
RefSeq Acc Id: XM_008008391   ⟹   XP_008006582
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11415,346,979 - 15,404,781 (+)NCBI
Vero_WHO_p1.0NW_0236660804,279,307 - 4,337,620 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008006582 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012847.1
Reference Protein Sequences
RefSeq Acc Id: XP_008006582   ⟸   XM_008008391
- UniProtKB: A0A0D9RW58 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000012847   ⟸   ENSCSAT00000014888


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016793 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014888.1 UniProtKB/TrEMBL
Gene3D-CATH Pneumovirus matrix protein 2 (M2), zinc-binding domain UniProtKB/TrEMBL
  Zinc finger, CCCH-type UniProtKB/TrEMBL
InterPro Su(sable)-like UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/TrEMBL
NCBI Gene ZC3H6 ENTREZGENE
PANTHER PTHR13119 UniProtKB/TrEMBL
  ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 UniProtKB/TrEMBL
Pfam zf-CCCH UniProtKB/TrEMBL
  zf-CCCH_2 UniProtKB/TrEMBL
  zf_CCCH_4 UniProtKB/TrEMBL
PROSITE ZF_C3H1 UniProtKB/TrEMBL
SMART ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP SSF90229 UniProtKB/TrEMBL
UniProt A0A0D9RW58 ENTREZGENE, UniProtKB/TrEMBL