CFAP99 (cilia and flagella associated protein 99) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: CFAP99 (cilia and flagella associated protein 99) Chlorocebus sabaeus
Analyze
Symbol: CFAP99
Name: cilia and flagella associated protein 99
RGD ID: 18654833
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cilia- and flagella-associated protein 99; PERQ amino acid-rich with GYF domain-containing protein 2; trichohyalin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12746,295,578 - 46,339,813 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660512,668,537 - 2,712,258 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
CFAP99
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12746,295,578 - 46,339,813 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660512,668,537 - 2,712,258 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CFAP99
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3842,418,955 - 2,463,002 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl42,418,955 - 2,463,002 (+)EnsemblGRCh38hg38GRCh38
GRCh3742,420,682 - 2,464,729 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3642,421,501 - 2,434,451 (+)NCBINCBI36Build 36hg18NCBI36
Celera42,332,341 - 2,375,891 (+)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef42,361,151 - 2,404,596 (+)NCBIHuRef
CHM1_142,418,868 - 2,462,799 (+)NCBICHM1_1
T2T-CHM13v2.042,417,709 - 2,461,661 (+)NCBIT2T-CHM13v2.0
Cfap99
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39534,441,107 - 34,486,205 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl534,445,944 - 34,484,671 (+)EnsemblGRCm39 Ensembl
GRCm38534,286,727 - 34,328,861 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl534,288,600 - 34,327,327 (+)EnsemblGRCm38mm10GRCm38
Celera531,758,204 - 31,798,023 (+)NCBICelera
Cytogenetic Map5B2NCBI
Cfap99
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81480,625,864 - 80,692,753 (-)NCBIGRCr8
mRatBN7.21476,423,923 - 76,468,170 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1476,410,555 - 76,468,125 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01481,685,428 - 81,725,165 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1481,687,021 - 81,725,181 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01482,359,202 - 82,411,837 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41482,119,128 - 82,158,480 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1475,352,754 - 75,392,405 (-)NCBICelera
Cytogenetic Map14q21NCBI
Cfap99
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555141,451,452 - 1,490,259 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555141,451,451 - 1,490,251 (+)NCBIChiLan1.0ChiLan1.0
CFAP99
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v232,755,872 - 2,799,854 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan142,692,154 - 2,737,601 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v042,564,809 - 2,609,964 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.142,470,752 - 2,512,802 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl42,478,352 - 2,513,349 (+)Ensemblpanpan1.1panPan2
CFAP99
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1361,764,704 - 61,804,676 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl361,765,205 - 61,796,291 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0362,240,279 - 62,280,336 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl362,241,013 - 62,271,802 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1361,731,711 - 61,770,942 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0361,936,658 - 61,976,688 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0362,296,504 - 62,336,572 (-)NCBIUU_Cfam_GSD_1.0
Cfap99
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528567,355,675 - 67,402,869 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647721,059,413 - 21,096,221 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647721,059,413 - 21,103,055 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP99
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl81,313,154 - 1,351,276 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.181,313,089 - 1,351,731 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28878,826 - 916,574 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cfap99
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475525,169,112 - 25,203,726 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475525,169,092 - 25,207,944 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_037983194   ⟹   XP_037839122
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660512,668,537 - 2,712,258 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037839122 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_037839122   ⟸   XM_037983194


Additional Information

Database Acc Id Source(s)
NCBI Gene CFAP99 ENTREZGENE