Gene: CRISPLD1 (cysteine rich secretory protein LCCL domain containing 1) Chlorocebus sabaeus |
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Analyze |
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Symbol: |
CRISPLD1 |
Name: |
cysteine rich secretory protein LCCL domain containing 1 |
RGD ID: |
18645526 |
Description: |
INVOLVED IN face morphogenesis (ortholog); hematopoietic stem cell homeostasis (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
cysteine-rich secretory protein LCCL domain-containing 1 |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
ChlSab1.1 - Green Monkey 1.1 Assembly |
Position: |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Additional References at PubMed
Genomics
Comparative Map Data
CRISPLD1 (Chlorocebus sabaeus - green monkey) |
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CRISPLD1 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 8 | 74,984,505 - 75,034,558 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 8 | 74,984,505 - 75,034,558 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 8 | 75,896,740 - 75,946,793 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 8 | 76,059,531 - 76,109,348 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 8 | 71,891,960 - 71,942,045 (+) | NCBI | | Celera | | | Cytogenetic Map | 8 | q21.13 | NCBI | | | | | HuRef | 8 | 71,385,701 - 71,435,787 (+) | NCBI | | HuRef | | | CHM1_1 | 8 | 75,948,305 - 75,998,390 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 8 | 75,414,017 - 75,464,071 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Crispld1 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 17,797,276 - 17,840,350 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 17,797,269 - 17,836,568 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 17,727,029 - 17,767,235 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 17,727,045 - 17,766,344 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 17,717,498 - 17,756,288 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 17,712,636 - 17,749,962 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 17,639,320 - 17,678,082 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | A3 | NCBI | | | | | cM Map | 1 | 5.32 | NCBI | | | | |
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Crispld1 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 5 | 6,050,970 - 6,098,265 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 5 | 1,267,347 - 1,314,926 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 5 | 1,274,647 - 1,314,926 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 5 | 3,391,366 - 3,431,657 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 5 | 5,030,247 - 5,070,534 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 5 | 4,716,685 - 4,757,020 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 5 | 663,750 - 711,033 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 5 | 670,754 - 711,033 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 5 | 665,941 - 706,220 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 5 | 343,493 - 383,772 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 5 | 918,823 - 959,103 (-) | NCBI | | Celera | | | Cytogenetic Map | 5 | q11 | NCBI | | | | |
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Crispld1 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955444 | 5,494,540 - 5,537,887 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955444 | 5,495,253 - 5,536,277 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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CRISPLD1 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 7 | 90,725,528 - 90,780,206 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 8 | 66,353,210 - 66,403,303 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 8 | 71,516,510 - 71,566,266 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 8 | 73,160,653 - 73,210,388 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 8 | 73,160,442 - 73,210,388 (+) | Ensembl | panpan1.1 | | panPan2 | |
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CRISPLD1 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 29 | 23,353,872 - 23,397,768 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 29 | 23,350,781 - 23,396,682 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 29 | 23,616,775 - 23,662,427 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 29 | 23,461,848 - 23,509,733 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 29 | 23,461,535 - 23,507,954 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 29 | 23,520,404 - 23,568,335 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 29 | 23,555,953 - 23,603,710 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 29 | 23,907,355 - 23,955,156 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Crispld1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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CRISPLD1 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 4 | 60,948,335 - 60,998,368 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 4 | 60,948,326 - 60,998,364 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 4 | 66,612,154 - 66,662,096 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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Crispld1 (Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
Sequence
RefSeq Acc Id: |
XM_008000926 ⟹ XP_007999117 |
Type: |
CODING |
Position: |
Green Monkey Assembly | Chr | Position (strand) | Source |
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ChlSab1.1 | 8 | 70,543,446 - 70,590,649 (+) | NCBI | Vero_WHO_p1.0 | NW_023666039 | 70,774,418 - 70,820,357 (-) | NCBI |
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Sequence: |
GAGGGAAAGCCAGTTTTCTCAACCCTGTGCATGGAAATTATGAATAGCTACTAGAAAAATACAA AGTTAGGAACTTTTTGTACTTAAAACTGTTATAAAATTGCAAAATTACACTTCTATAAAAGTCT TATGTGCATCAAAACTTTTCACCTTCTGCATCTTTCTAATAAGTGATGCTTCCCTTGTCTGTGA CAGGAAGCAAGGTCTCACCTTCAGTTGAGGCTTACATTTGAGTTTTTAGCTTTGATAGATACGG TGTAGTTGAATGGTGGAAAGAGAGAGGCAACAGCTTGGGATGATTTGAGTTATGACCACAATGT TGTACTTGATTTGATCATATGCTAGATACTCTAGCATTTAGAAAGAAGGAAAATTGAGATTATG ATTCACCACATTAGGGAAGCAAACATAGATGGATTAAAATAATTAAAAATAAAAACAAAAAACA GCCCCACACTCGGTAGGGTAAACTGTTGTGAATTTAAAATTAGCAATTTTCTTACTCCAGATTA CAACATGAACAAAGGAACGACCTCTCTTTTCACTACCTATTCTGGCGTTTCAATTCTTGTCAAC AATCCCTGATAAATTAACTAATGGCATCCTTTATATCAACTCCTTAAATGTATATACATCATAA GAAAAAAAAGTGCTATGGCCACCTTGAGAAGACAGTGCCTCATATTTTATGAATAAAGAGGGTG TCTCAACTGTCAGGCCATTCTGAGTCACATATTGACCCCAAATTCTATTGAACATCTTCCCCAC CTGGATCTCATCAAGGATGCGGACCCCTGGGAAAAATAAAAGGAAAAGACTTTCTTTCTCCATT TCATCCCCTATTTCCCCCTTTTGTGCCTCCAAGATTGAAGGTGTTAACCCCATCCCCCACCCAC TCCATGCTCTCTGGGGCAGCCCCTTCCTCTGTAAGGACCCTAAAAGGCATTTCAACATATCAGC AGAAAGGAACTGAGTGGGAGGAGGATCTTTGCATGCAGGGTAGCTGGCGGGGTTGACGGGGGTT GGGGCCCTCCTTGCACATATCTCCCACGGGGGGACCAGACCTTCCGGGCTCGGGTATTGGGAGC CCAAAGCACGCCTACAAAGGCCGAGCGCCCTGGCTTCGCAGCGTCCCAGAGAAGCAGGGCGGGC TGCTTCTGGCGGCTCTGGCGGGCCTCTGGCCAAGGCAGGCTGGAGGTGGGGGTGGGCGAGGAGG GGCGCTGAAGTCACGTGCCCGCGCTAGGGCCGCAATAAATGCTCGGGAGCGCGAGGGAGCGACG AAAGCGCTCGGCGCCTGGTTCTGCGCGCACCGGCTGCACCCAGCAAGAGCAAGAGGTCGCTTCC AGCCTCCGCAGCCGAGCCTTGCTCGTGTCCCCGCCCGTCGCTCCTGCAGATAATGCTCAGAGAC TCTGGGGCGCCCACCCTGGCAAACTAACGAAGCAGCTCCCTTCTCACCCCAACTGCAGGTCTAA TTTTGGACGCTTTGCCTGCCACTTCTTCAAGGTTGAGGGAGCCAGAGAGGCGGAGGCTCGCGTA TTCCTGCAGTCAGAGCCCACGTCGCCCCCCTGACGCGCGGTGCTCGGGCCCTTCCCGAGCGGGG CTCTCGGTCTGCGGTCTCGTGTGAAGGCTCTGGGCGGCTGCAGAGGCCGGCCGTCCGGTTTGGC TCGGCTCTGCCAGGAAACTTCACACTGGAGAGCCAAAAGGAGTGGAAGAGCCTGTCTTGGAGAT TTTCCTGGGGAAATCCTGAGGTCATTCATTATGAAGTGTACCGCGCGGGAGTGGCTCAGAGTAA CCACAGTGCTGTTCATGGCTAGAGCAATTCCAGCCATGGTGGTTCCTAATGCCACTTTATTGGA GAAACTTTTGGAAAAGTACATGGATGAGGATGGTGAGTGGTGGACAGCCAAACAACGAGGGAAA AGGGCCATCACAGACAATGACATGCAGAGTATATTGGACCTTCATAATAAATTACGAAGTCAGG TGTATCCAACAGCCTCTAATATGGAGTATATGACATGGGATGTAGAGCTGGAAAGATCTGCAGA ATCCTGGGCTGAATCTTGCCAGTGGGAACATGGACCTGCAAGCTTGCTTCCATCAATTGGACAG AATTTGGGAGCACACTGGGGAAGATATAGGCCCCCGACGTTTCATGTACAAGCATGGTATGATG AAGTGAAAGACTTTAGCTACCCTTATGAACATGAATGCAACCCATATTGTCCATTCAGGTGTTC TGGTCCTGTATGTACACATTATACACAGGTGGTGTGGGCAACTAGTAGCAGAATTGGTTGTGCC ATTAATTTGTGTAATAACATGAACATCTGGGGGCAGATATGGCCCAAAGCTGTCTACCTGGTGT GCAATTACTCCCCAAAGGGAAACTGGTGGGGCCACGCCCCTTACAAACATGGGCGGCCCTGTTC TGCTTGCCCACCTAGTTTTGGAGGGGGCTGTAGAGAAAATCTGTGCTACAAAGAAGGGTCAGAT GGGTATTATACCCCTCGAGAAGAGGAAACAAATGAAATAGAACGCCAGCAGTCACAAGTCCATG ACACCCATGTCCAGACAAGATCAGATGATAGTAGCAGAAATGAAGTCATAAGCACACAGCAAAT GTCCCAAATTGTTTCTTGTGAAGTAAGATTAAGAGATCAGTGCAAAGGAACAACCTGCAATAGG TACGAATGTCCTGCTGGCTGTGTGGATAGTAAAGCTAAAGTTATTGGCAGTGTACATTATGAAA TGCAATCCAGCATTTGTAGAGCTGCAATTCATTATGGTATAATAGACAATGATGGCGGTTGGGT AGATATCACTAGACAAGGAAGAAAACATTATTTCATCAAGTCTAATAGAAATGGTATTCAGACA ATTGGCAAATATCAGTCTGCTAATTCCTTCACAGTCTCTAAAGTAACAGTTCAGGCTGTGACTT GTGAAACAACTGTGGAACAGCTCTGTCCATTTCATAAGCCTGCTTCACATTGCCCAAGAGTATA CTGTCCTCGTAACTGTATGCAAGCAAATCCACACTATGCTCGTGTAATTGGAACTCGAGTTTAT TCCGATCTGTCCAGTATCTGCAGAGCAGCAGTACATGCTGGAGTGGTTCGAAATCACGGTGGTT ATGTTGATGTAATGCCTGTGGACAAAAGAAAGACCTACATTGCTTCTTTTCAGAATGGAATCTT CTCAGAAAGTTTACAGAATCCTCCAGGAGGAAAGGCATTCAGAGTATTTGCTGTTGTGTGAAAT GGAATACTTGGAAGAGGATTGTAAAGACTATTCCAAATGCAGTATTTCTGAATTTTGTATAAAA CTGTAACATTACTGTACAGAGTACATCAACTATTTTCAGCTCCCAAAAGTGCCAAATACATATA AATCTTGATAAACAAAGTCTATAAAATAAAACATGGGACATTAGCTTTGGGAAAAGTAATGAAA ATATAATGGTTTTAGAAATCCTGTGTTAAATATTGCTATATTTTCTTAGCAGTTATTTCTACAG TTAATTACATAGTCATGATTGTTCTACATTTCATATATTATATGGTGCTTTGTATATGCCACTA ATAAAATGAATCTAAACATTGAATGTGAATGGCCCTCAGAAAATCACCTAGTACATTTAAAAAC TATCGACTATAAAACTGAAAGAAACTTTATCACATTTTCCCCAGTTCAATGCTATGCCATTATC AACTCCAAATAATCTCAAATAATTTTCCACTTAATAACTAAGGTTTTTTTTCTTCTGTTAATTT AGGCATATAGAATATTAAGTTCTGATATTGCACTTCTTATTTTATATAAAATAATCCTTTAATA TCCAAATGAATCTATTAAAATGTTTGATTCCTTGGGAGTGGCCTTAAAAATAAATGTAATAAAG TTAGAGTAGTGGTATGAAAACATTCCTAGTGATCATATAGTAAATGTAGGGTTAAGCATGGGCA GCCAGAGCTTTCTATGTACTGTTAAAATTAAGGTCACATATTTTCTTTTGTATCCTGGCAAATA CTCCTGCAGGGCAGGAAGTATAATAGCAAAAAGTTGAACAAAGATGAACTAATGTATTACATCA CCATTGCCACTGATTTTTTTTTTTAATGGTAAATGACCTTGTGTATAAATATTGCCATATCATG GTGCCTATAATGGTGATATATTTGTTTCTATGAAAAATGTATTGTGCTTTGATACTAAAATCTG TAAAATGTTAGTATTGGTAACTTTTTTTTTTCTGCTGGTGGATTTACTATTTCACATAAACATA TTAAAATTAATCATGTTTCAAATTTTATTTTCAGTTCCTTTTGCATGCTTATTTTGATTTAGAA ATCACTTTAAGATAAATGAACAAAATTATTGTAAGTCTTCTAAATTTGGTTTATTGACGTTAGT ATCGATAACATACTTAATACCAGATGTCTACAAAATTGACCTAATTATTTCAGTATTTGCATGT GAAAGAGAAACATATATTTAGAGACATAGCAAGGGAGATTTTGAATAAAGAGAGATGAATTTAT AAAGTAGGAAAAAATCTGAAAGGTACAAAGTGATTATAAAAGAATTAACAGGACAATAAATACT TCAAATACTTTTAGAAGGTAAATGATTAGGAGCTTAGGAGGAATAAAAGAGATAAATACCATGC AGTGATCAAGGAAAGCAAGAGAGCGGATAATACAAAAGTGAAAGAAGAAGGGCTCACATAAATC ACTTCTGGAGTGCAAATTATAAAGACATCAACATTTTGGATCATTTAATAAGTATTGGCTTATA GCTAAGTGGTTCCAAATACTGGTAATTAAAACAATGATGTATACATTAAAGATTGCAAAACTTA AAAGCAGATTTTTATGGGAACATTTTTTGAAAGGATACATTACCACCTTCTTAAATAGTGTGAC TTTACATAGACTCTTTTTCTGGTCCTTACTGCCCCTCCCACAACAGGGACGCCCCATCAGTTCT GTCAGTATAAGATTTTCTTCTATTTGCTCTTAGTTTAAATCTCCATCATCAATTCCCCTTACTG TTGTAATGTCTTCAGCTGAAGCCTCTTCTTTGTGTCTTTTTCCATTCCTTTTTAATGCATTCGT ATTTCCCAGCTCCAGAACCCTCGAAATTAACTCTTCCGTGAGTTTCCATTGCTTAAGAAAAACC GAACACCCTTGTAAAAACATTTGAGAACTTTCATAGTCTTGTTCATATTGTTTACCTATCTTTG ACACAAGGCGTGGCCTCGGGTAATTTATTTAGCTTCAATTTACCTTACCTGTAAAATGGAACAA ATAATATCTCCTTGAGATTGCTCTACGAATTAATTGACACATTATGTGTAATGTACTTAAAGGA ATAATAAACACGTGGTCGTGGATGCCATTTTCTATTATTATCATAACTTTTGTTATTTAGTTTG AGGAAACTATTCATCTGTCATATACTATTGATCCTTTGGCACTTAAGTAAATGTGAAATCCTCC AGGAATTTTCCTGTGATTCTCCTTGTAAGAAATAAATGCTAATACGATATCCTTTTAA
hide sequence
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RefSeq Acc Id: |
XM_038000376 ⟹ XP_037856304 |
Type: |
CODING |
Position: |
Green Monkey Assembly | Chr | Position (strand) | Source |
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Vero_WHO_p1.0 | NW_023666039 | 70,774,471 - 70,795,727 (-) | NCBI |
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RefSeq Acc Id: |
XP_007999117 ⟸ XM_008000926 |
- Peptide Label: |
isoform X1 |
RefSeq Acc Id: |
XP_037856304 ⟸ XM_038000376 |
- Peptide Label: |
isoform X2 |
Additional Information
External Database Links
Database |
Acc Id |
Source(s) |
NCBI Gene |
CRISPLD1 |
ENTREZGENE |
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