CRISPLD1 (cysteine rich secretory protein LCCL domain containing 1) - Rat Genome Database

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Gene: CRISPLD1 (cysteine rich secretory protein LCCL domain containing 1) Chlorocebus sabaeus
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Symbol: CRISPLD1
Name: cysteine rich secretory protein LCCL domain containing 1
RGD ID: 18645526
Description: INVOLVED IN face morphogenesis (ortholog); hematopoietic stem cell homeostasis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cysteine-rich secretory protein LCCL domain-containing 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1870,543,446 - 70,590,649 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603970,774,418 - 70,820,357 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CRISPLD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1870,543,446 - 70,590,649 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603970,774,418 - 70,820,357 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CRISPLD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38874,984,505 - 75,034,558 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl874,984,505 - 75,034,558 (+)EnsemblGRCh38hg38GRCh38
GRCh37875,896,740 - 75,946,793 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36876,059,531 - 76,109,348 (+)NCBINCBI36Build 36hg18NCBI36
Celera871,891,960 - 71,942,045 (+)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef871,385,701 - 71,435,787 (+)NCBIHuRef
CHM1_1875,948,305 - 75,998,390 (+)NCBICHM1_1
T2T-CHM13v2.0875,414,017 - 75,464,071 (+)NCBIT2T-CHM13v2.0
Crispld1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39117,797,276 - 17,840,350 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl117,797,269 - 17,836,568 (+)EnsemblGRCm39 Ensembl
GRCm38117,727,029 - 17,767,235 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl117,727,045 - 17,766,344 (+)EnsemblGRCm38mm10GRCm38
MGSCv37117,717,498 - 17,756,288 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36117,712,636 - 17,749,962 (+)NCBIMGSCv36mm8
Celera117,639,320 - 17,678,082 (+)NCBICelera
Cytogenetic Map1A3NCBI
cM Map15.32NCBI
Crispld1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr856,050,970 - 6,098,265 (-)NCBIGRCr8
mRatBN7.251,267,347 - 1,314,926 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl51,274,647 - 1,314,926 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx53,391,366 - 3,431,657 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.055,030,247 - 5,070,534 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.054,716,685 - 4,757,020 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05663,750 - 711,033 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5670,754 - 711,033 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05665,941 - 706,220 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45343,493 - 383,772 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5918,823 - 959,103 (-)NCBICelera
Cytogenetic Map5q11NCBI
Crispld1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554445,494,540 - 5,537,887 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554445,495,253 - 5,536,277 (-)NCBIChiLan1.0ChiLan1.0
CRISPLD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2790,725,528 - 90,780,206 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1866,353,210 - 66,403,303 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0871,516,510 - 71,566,266 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1873,160,653 - 73,210,388 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl873,160,442 - 73,210,388 (+)Ensemblpanpan1.1panPan2
CRISPLD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12923,353,872 - 23,397,768 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2923,350,781 - 23,396,682 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2923,616,775 - 23,662,427 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02923,461,848 - 23,509,733 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2923,461,535 - 23,507,954 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12923,520,404 - 23,568,335 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02923,555,953 - 23,603,710 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02923,907,355 - 23,955,156 (+)NCBIUU_Cfam_GSD_1.0
Crispld1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530355,907,633 - 55,927,960 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366483,520,624 - 3,663,444 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRISPLD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl460,948,335 - 60,998,368 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1460,948,326 - 60,998,364 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2466,612,154 - 66,662,096 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Crispld1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474416,180,413 - 16,223,321 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474416,180,504 - 16,223,362 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

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Variants in CRISPLD1
1074 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_008000926   ⟹   XP_007999117
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1870,543,446 - 70,590,649 (+)NCBI
Vero_WHO_p1.0NW_02366603970,774,418 - 70,820,357 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038000376   ⟹   XP_037856304
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603970,774,471 - 70,795,727 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007999117 (Get FASTA)   NCBI Sequence Viewer  
  XP_037856304 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_007999117   ⟸   XM_008000926
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037856304   ⟸   XM_038000376
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene CRISPLD1 ENTREZGENE