CIB2 (calcium and integrin binding family member 2) - Rat Genome Database

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Gene: CIB2 (calcium and integrin binding family member 2) Chlorocebus sabaeus
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Symbol: CIB2
Name: calcium and integrin binding family member 2
RGD ID: 18618807
Description: ENCODES a protein that exhibits calcium ion binding (inferred); integrin binding (inferred); magnesium ion binding (inferred); INVOLVED IN calcium ion homeostasis (inferred); cellular response to ATP (inferred); photoreceptor cell maintenance (inferred); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 48 (ortholog); Bloom syndrome (ortholog); FOUND IN cell periphery (inferred); cell projection (inferred); cuticular plate (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium and integrin-binding family member 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1265,222,657 - 5,248,133 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl265,222,902 - 5,248,191 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048136,554,738 - 136,580,711 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CIB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1265,222,657 - 5,248,133 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl265,222,902 - 5,248,191 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048136,554,738 - 136,580,711 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CIB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381578,104,606 - 78,131,535 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1578,104,606 - 78,131,535 (-)EnsemblGRCh38hg38GRCh38
GRCh371578,396,948 - 78,423,877 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361576,184,046 - 76,210,933 (-)NCBINCBI36Build 36hg18NCBI36
Build 341576,184,045 - 76,210,933NCBI
Celera1555,333,003 - 55,359,888 (-)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1555,154,506 - 55,181,422 (-)NCBIHuRef
CHM1_11578,514,886 - 78,541,781 (-)NCBICHM1_1
T2T-CHM13v2.01575,967,162 - 75,994,101 (-)NCBIT2T-CHM13v2.0
Cib2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39954,452,074 - 54,467,512 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl954,452,078 - 54,467,502 (-)EnsemblGRCm39 Ensembl
GRCm38954,544,794 - 54,560,190 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl954,544,794 - 54,560,218 (-)EnsemblGRCm38mm10GRCm38
MGSCv37954,393,159 - 54,407,886 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36954,342,933 - 54,358,324 (-)NCBIMGSCv36mm8
Celera951,788,257 - 51,803,325 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.7NCBI
Cib2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8863,826,410 - 63,843,301 (-)NCBIGRCr8
mRatBN7.2854,930,265 - 54,947,157 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx860,464,045 - 60,480,583 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0858,743,039 - 58,759,577 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0856,607,273 - 56,623,811 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0859,123,078 - 59,139,946 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl859,123,079 - 59,139,946 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0857,703,517 - 57,720,644 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4858,093,941 - 58,110,808 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1858,112,995 - 58,129,862 (-)NCBI
Celera854,418,915 - 54,435,782 (-)NCBICelera
Cytogenetic Map8q24NCBI
Cib2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955450659,383 - 675,634 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955450660,655 - 674,726 (-)NCBIChiLan1.0ChiLan1.0
CIB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21667,318,400 - 67,345,020 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11571,483,918 - 71,510,707 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01557,033,782 - 57,060,650 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11575,998,797 - 76,025,485 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1575,998,797 - 76,025,485 (-)Ensemblpanpan1.1panPan2
CIB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha360,968,808 - 60,983,455 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0358,745,271 - 58,759,919 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl358,743,365 - 58,760,158 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1358,241,794 - 58,256,438 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0358,449,915 - 58,464,422 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0358,798,942 - 58,813,472 (-)NCBIUU_Cfam_GSD_1.0
Cib2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640119,010,960 - 119,031,107 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647136,859,018 - 36,878,878 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647136,859,018 - 36,879,170 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl747,788,646 - 47,813,399 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1747,807,806 - 47,813,400 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2753,330,804 - 53,365,124 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cib2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248942,688,814 - 2,704,747 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248942,688,784 - 2,704,742 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000012859   ⟹   ENSCSAP00000010879
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl265,222,902 - 5,248,191 (+)Ensembl
RefSeq Acc Id: XM_008015732   ⟹   XP_008013923
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1265,222,657 - 5,248,129 (+)NCBI
Vero_WHO_p1.0NW_023666048136,554,741 - 136,580,711 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008015733   ⟹   XP_008013924
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1265,232,719 - 5,248,133 (+)NCBI
Vero_WHO_p1.0NW_023666048136,554,738 - 136,570,952 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008015734   ⟹   XP_008013925
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1265,237,500 - 5,248,133 (+)NCBI
Vero_WHO_p1.0NW_023666048136,554,738 - 136,565,436 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008013923 (Get FASTA)   NCBI Sequence Viewer  
  XP_008013924 (Get FASTA)   NCBI Sequence Viewer  
  XP_008013925 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010879
  ENSCSAP00000010879.1
RefSeq Acc Id: XP_008013923   ⟸   XM_008015732
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RQJ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008013924   ⟸   XM_008015733
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008013925   ⟸   XM_008015734
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000010879   ⟸   ENSCSAT00000012859


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014761 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012859.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro CIBP UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
KEGG Report csab:103245261 UniProtKB/TrEMBL
NCBI Gene CIB2 ENTREZGENE
PANTHER CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2 UniProtKB/TrEMBL
  CALCIUM AND INTEGRIN-BINDING FAMILY MEMBER 2 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A0D9RQJ0 ENTREZGENE, UniProtKB/TrEMBL