MLEC (malectin) - Rat Genome Database

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Gene: MLEC (malectin) Chlorocebus sabaeus
Analyze
Symbol: MLEC
Name: malectin
RGD ID: 18617823
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); enzyme binding (inferred); INVOLVED IN protein N-linked glycosylation (inferred); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111116,043,591 - 116,058,578 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11116,043,522 - 116,053,342 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037129,038,771 - 129,054,067 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MLEC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111116,043,591 - 116,058,578 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11116,043,522 - 116,053,342 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037129,038,771 - 129,054,067 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MLEC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812120,687,149 - 120,701,859 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12120,687,149 - 120,704,282 (+)EnsemblGRCh38hg38GRCh38
GRCh3712121,124,952 - 121,139,662 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612119,609,332 - 119,624,050 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412119,587,668 - 119,602,387NCBI
Celera12120,759,216 - 120,773,932 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12118,134,230 - 118,148,946 (+)NCBIHuRef
CHM1_112121,093,737 - 121,108,453 (+)NCBICHM1_1
T2T-CHM13v2.012120,676,305 - 120,691,013 (+)NCBIT2T-CHM13v2.0
Mlec
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,281,040 - 115,296,235 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5115,281,040 - 115,296,238 (-)EnsemblGRCm39 Ensembl
GRCm385115,142,981 - 115,158,176 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,142,981 - 115,158,179 (-)EnsemblGRCm38mm10GRCm38
MGSCv375115,592,990 - 115,608,185 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365115,406,090 - 115,419,145 (-)NCBIMGSCv36mm8
Celera5112,239,386 - 112,254,583 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.99NCBI
Mlec
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81247,118,918 - 47,133,598 (+)NCBIGRCr8
mRatBN7.21241,458,234 - 41,468,710 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1241,458,231 - 41,468,708 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1242,625,752 - 42,636,202 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01243,239,406 - 43,249,859 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01242,299,973 - 42,310,424 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01247,219,071 - 47,233,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,218,969 - 47,252,286 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01249,014,186 - 49,024,662 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,729,870 - 42,740,346 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11242,593,257 - 42,603,733 (+)NCBI
Celera1243,076,917 - 43,087,411 (+)NCBICelera
Cytogenetic Map12q16NCBI
Mlec
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545510,974,968 - 10,983,965 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545510,969,859 - 10,983,977 (-)NCBIChiLan1.0ChiLan1.0
MLEC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210128,756,840 - 128,772,048 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112128,753,637 - 128,768,421 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012118,270,574 - 118,285,314 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112121,643,823 - 121,658,825 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12121,644,247 - 121,653,514 (+)Ensemblpanpan1.1panPan2
MLEC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12616,536,545 - 16,551,891 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2616,537,016 - 16,546,514 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2616,539,273 - 16,553,193 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02616,802,656 - 16,816,591 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2616,802,901 - 16,816,540 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12616,763,251 - 16,777,154 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02616,838,978 - 16,854,245 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02616,881,299 - 16,895,214 (+)NCBIUU_Cfam_GSD_1.0
Mlec
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118145,797,684 - 145,812,544 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936668301,710 - 311,713 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936668293,997 - 311,441 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MLEC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1440,601,990 - 40,617,295 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,601,982 - 40,617,382 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21443,069,346 - 43,084,744 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Mlec
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474713,000,403 - 13,009,818 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474712,995,246 - 13,009,827 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MLEC
236 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008004965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000000255   ⟹   ENSCSAP00000015799
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl11116,043,522 - 116,053,342 (+)Ensembl
RefSeq Acc Id: XM_008004965   ⟹   XP_008003156
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.111116,043,591 - 116,058,578 (+)NCBI
Vero_WHO_p1.0NW_023666037129,038,771 - 129,054,067 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008003156 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015799
  ENSCSAP00000015799.1
RefSeq Acc Id: XP_008003156   ⟸   XM_008004965
- UniProtKB: A0A0D9S4L0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000015799   ⟸   ENSCSAT00000000255


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002239 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000255.1 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding lectin UniProtKB/TrEMBL
InterPro Malectin_dom UniProtKB/TrEMBL
  MLEC UniProtKB/TrEMBL
KEGG Report csab:103239263 UniProtKB/TrEMBL
NCBI Gene MLEC ENTREZGENE
PANTHER MALECTIN UniProtKB/TrEMBL
  PTHR13460 UniProtKB/TrEMBL
Pfam Malectin UniProtKB/TrEMBL
UniProt A0A0D9S4L0 ENTREZGENE, UniProtKB/TrEMBL