ACTR10 (actin related protein 10)

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Gene: ACTR10 (actin related protein 10) Chlorocebus sabaeus

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Symbol:

ACTR10

Name:

actin related protein 10

RGD ID:

18610370

Description:

INVOLVED IN microtubule-based movement (ortholog); PARTICIPATES IN mitochondria transport pathway; FOUND IN dynactin complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

actin related protein 10 homolog; actin-related protein 10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	35,392,500 - 35,427,233 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	35,392,570 - 35,428,713 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	23,630,457 - 23,664,279 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

microtubule-based movement (ISO)

Cellular Component

cytoskeleton (IEA)

dynactin complex (ISO)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

mitochondria transport pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

ACTR10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	35,392,500 - 35,427,233 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	35,392,570 - 35,428,713 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	23,630,457 - 23,664,279 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

ACTR10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	58,200,149 - 58,235,636 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	58,200,080 - 58,235,636 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	58,666,867 - 58,702,354 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	57,736,586 - 57,772,107 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	57,736,608 - 57,771,261	NCBI
Celera	14	38,716,785 - 38,752,305 (+)	NCBI		Celera
Cytogenetic Map	14	q23.1	NCBI
HuRef	14	38,835,297 - 38,867,990 (+)	NCBI		HuRef
CHM1_1	14	58,605,356 - 58,640,875 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	52,407,087 - 52,442,570 (+)	NCBI		T2T-CHM13v2.0

Actr10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	70,984,631 - 71,011,492 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	70,984,631 - 71,011,492 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	70,937,857 - 70,964,718 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	70,937,857 - 70,964,718 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	72,038,844 - 72,065,705 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	71,856,512 - 71,880,887 (+)	NCBI		MGSCv36	mm8
Celera	12	72,041,243 - 72,068,179 (+)	NCBI		Celera
Cytogenetic Map	12	C2	NCBI
cM Map	12	29.39	NCBI

Actr10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	95,182,082 - 95,208,325 (+)	NCBI		GRCr8
mRatBN7.2	6	89,446,141 - 89,472,350 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	89,446,093 - 89,473,047 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	89,830,218 - 89,856,625 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	90,129,688 - 90,156,098 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	89,569,183 - 89,595,586 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	93,385,457 - 93,411,605 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	93,385,457 - 93,411,576 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	102,831,300 - 102,857,448 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	93,054,624 - 93,080,772 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	93,058,079 - 93,084,199 (+)	NCBI
Celera	6	87,928,297 - 87,954,443 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

Actr10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	11,948,619 - 11,970,437 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	11,948,711 - 11,969,981 (+)	NCBI	ChiLan1.0	ChiLan1.0

ACTR10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	59,323,230 - 59,356,963 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	58,539,758 - 58,573,486 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	38,793,335 - 38,827,140 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	57,062,305 - 57,096,164 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	57,062,416 - 57,095,914 (+)	Ensembl	panpan1.1		panPan2

ACTR10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	33,575,321 - 33,607,370 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	33,575,373 - 33,607,196 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	33,337,033 - 33,369,355 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	33,816,873 - 33,849,217 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	33,816,923 - 33,941,715 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	33,430,128 - 33,462,446 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	33,497,317 - 33,529,644 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	33,872,398 - 33,904,729 (+)	NCBI		UU_Cfam_GSD_1.0

Actr10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	71,548,598 - 71,574,547 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	2,617,072 - 2,643,129 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	2,617,176 - 2,642,680 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACTR10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	187,307,660 - 187,336,523 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	187,307,483 - 187,335,046 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	208,211,296 - 208,238,677 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Actr10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624884	3,275,328 - 3,314,343 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624884	3,275,358 - 3,313,222 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007986814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007986815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037984045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000012538 ⟹ ENSCSAP00000010571

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	24	35,392,570 - 35,428,713 (+)	Ensembl

RefSeq Acc Id:

XM_007986814 ⟹ XP_007985005

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	24	35,392,507 - 35,427,233 (+)	NCBI
Vero_WHO_p1.0	NW_023666053	23,630,457 - 23,664,279 (+)	NCBI

Sequence:

show sequence

CGCGCCTGCCAGCGCCTCTTTTCCCCTAGTCCTGGAGACGGCCGCACCTGCAAGCGTTTTGGTC
CAACGCGGGGTGAGGCACAGCCTGGGACAGCCCGGGTCCGGCGCGCCGCCGCCGCTCGTGGCCC
CCGCCGTCGCCGACGCCCGAGCGCCGGAGTCCCGGCCCCGCCCCCCGAGCGCAGAAGCTTGTTC
GCGGTGGAGGCTGCGACCCTCTTCTCTCAGTCTTCCTTACTACCATGCCGCTCTACGAGGGCCT
GGGGAGCGGCGGAGAGAAGACGGCGGTCGTGATCGACCTGGGAGAGGCCTTTACCAAGTGTGGA
TTTGCTGGAGAAACTGGTCCAAGATGTATAATTCCTAGTGTGATAAAAAGAGCTGGGATGCCTA
AGCCTGTCAGAGTTGTTCAGTATAATATCAATACAGAAGAATTATATTCCTACCTAAAGGAATT
CATCCACATACTATATTTCAGGCATCTATTGGTGAATCCCAGAGACCGCCGAGTTGTGATTATC
GAGTCGGTATTATGTCCTTCTCACTTCAGAGAGACACTCACTCGTGTTCTTTTCAAATATTTTG
AGGTTCCATCTGTCTTGCTTGCTCCAAGTCATCTGATGGCTCTTCTGACGCTTGGGATTAATTC
TGCCATGGTCCTAGATTGTGGATATAGGGAAAGCCTGGTGTTACCCATATATGAAGGAATCCCA
GTTCTAAATTGTTGGGGAGCACTACCCCTAGCAGGAAAAGCTCTTCACAAAGAGTTGGAAACTC
AACTATTGGAACAATGTACTGTTGACACAAGTGCTGCTAAAGAACAGAGCCTTCCCTCAGTGAT
GGGTTCAGTTCCAGAAGGTGTCTTAGAGGACATTAAAGTGCGTACTTGCTTTGTAAGTGATCTG
AAGCGAGGACTAAAAATCCAAGCAGCAAAATTTAATATTGATGGGAATAACGAGCGTCCCTCCC
CACCCCCAAATGTTGACTATCCGTTAGATGGAGAGAAGATTTTACATGTCCTTGGATCAATCAG
AGATTCAGTTGTGGAAATTCTTTTTGAACAAGATAATGAAGAGAAATCAGTTGCCACTTTAATA
TTGGATTCCCTTATACAGTGTCCAATAGACACCAGGAAGCAACTAGCAGAGAATTTGGTAGTCA
TAGGTGGCACTTCTATGTTGCCAGGATTTCTCCACAGATTGCTTGCAGAAATAAGGTATTTGGT
AGAAAAACCAAAATATAAAAAAGCCCTTGGCACTAAGACATTTCGAATTCATACTCCACCTGCA
AAAGCTAATTGTGTGGCCTGGTTGGGAGGGGCTATTTTTGGAGCATTACAAGATATACTTGGGA
GCCGTTCTGTTTCAAAGGAATATTATAATCAGACGGGCCGTATACCTGATTGGTGTTCTCTCAA
TAACCCACCTTTGGAAATGATGTTTGATGTTGGGAAAACTCAACCACCTCTGATGAAGAGAGCG
TTTTCCACTGAGAAATAGAAGTTTGATTAAAAATCAACCTTGCTTCATATTAAATATTTAACCA
ATTATAAGCAAATTGTACAAAGTATGTAGGATGTTTTGTTACAGAGGAGTATAGTGGAAGTGAA
AGCATTCTGTGTTTACTCTTTGCATTAATATATAATTCTTTTGACTTTGTTTCTCTTGTGTACT
GGTAACATGGTAGCTGGTGCTTACTGAAATCTGTTGTGTTAATATCAATAAAGTGTAGTAAAGC
AGTTTAATT

hide sequence

RefSeq Acc Id:

XM_037984045 ⟹ XP_037839973

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666053	23,630,551 - 23,664,279 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007985005	(Get FASTA)	NCBI Sequence Viewer
	XP_037839973	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000010571.1

RefSeq Acc Id:	XP_007985005 ⟸ XM_007986814
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RPN2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000010571 ⟸ ENSCSAT00000012538

RefSeq Acc Id:	XP_037839973 ⟸ XM_037984045
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000014447	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000012538.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.420.40	UniProtKB/TrEMBL
InterPro	Actin	UniProtKB/TrEMBL
	ATPase_NBD	UniProtKB/TrEMBL
KEGG Report	csab:103229088	UniProtKB/TrEMBL
NCBI Gene	ACTR10	ENTREZGENE
PANTHER	PTHR11937	UniProtKB/TrEMBL
	PTHR11937:SF14	UniProtKB/TrEMBL
Pfam	Actin	UniProtKB/TrEMBL
SMART	ACTIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53067	UniProtKB/TrEMBL
UniProt	A0A0D9RPN2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations