| Gene: LOC103231065 (olfactory receptor 2T1) Chlorocebus sabaeus |
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Analyze |
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| Symbol: |
LOC103231065 |
| Name: |
olfactory receptor 2T1 |
| RGD ID: |
18608991 |
| Description: |
ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog); gastrointestinal stromal tumor (ortholog); Neurodevelopmental Disorders (ortholog) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| RGD Orthologs |
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| Alliance Orthologs |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
ChlSab1.1 - Green Monkey 1.1 Assembly |
| Position: |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
LOC103231065
(Chlorocebus sabaeus - green monkey) |
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OR2T1
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 1 | 248,403,048 - 248,408,020 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 248,403,048 - 248,408,020 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 248,566,349 - 248,571,321 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 246,635,919 - 246,637,028 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 1 | 244,895,336 - 244,896,446 | NCBI | | | | | Celera | 1 | 221,855,733 - 221,856,842 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | q44 | NCBI | | | | | HuRef | 1 | 218,956,300 - 218,957,409 (+) | NCBI | | HuRef | | | CHM1_1 | 1 | 249,841,494 - 249,842,603 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 247,828,076 - 247,833,646 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Or2t1
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 14 | 8,140,697 - 8,141,650 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 14 | 8,137,972 - 8,146,935 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 14 | 14,328,113 - 14,329,066 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 14 | 14,322,828 - 14,331,791 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 14 | 15,160,627 - 15,161,580 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 14 | 13,121,380 - 13,122,333 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 14 | 10,004,247 - 10,005,200 (+) | NCBI | | Celera | | | Cytogenetic Map | 14 | A1 | NCBI | | | | | cM Map | 14 | 7.08 | NCBI | | | | |
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Or2t1
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 15 | 13,391,080 - 13,392,033 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 15 | 10,960,562 - 10,961,515 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 15 | 10,954,685 - 10,966,743 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 15 | 13,087,941 - 13,088,894 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 15 | 14,019,713 - 14,020,666 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 15 | 12,301,220 - 12,302,173 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 15 | 12,261,122 - 12,262,075 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 15 | 12,261,028 - 12,262,164 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 15 | 16,294,146 - 16,295,099 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 15 | 12,472,119 - 12,473,072 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 15 | 12,472,118 - 12,473,072 (-) | NCBI | | | | | Celera | 15 | 10,968,306 - 10,969,259 (-) | NCBI | | Celera | | | Cytogenetic Map | 15 | p16 | NCBI | | | | |
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LOC102021128
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955418 | 30,198,087 - 30,199,043 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955418 | 30,198,087 - 30,199,058 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LOC100972936
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 579,291 - 585,402 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 855,639 - 861,338 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 224,108,483 - 224,109,592 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 229,552,860 - 229,553,969 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 229,552,860 - 229,553,969 (+) | Ensembl | panpan1.1 | | panPan2 | |
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OR2T1
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 14 | 2,613,861 - 2,614,946 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 14 | 2,613,990 - 2,614,946 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 14 | 2,264,145 - 2,265,101 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 14 | 2,346,746 - 2,347,702 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 14 | 2,346,746 - 2,347,702 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 14 | 2,510,348 - 2,511,304 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 14 | 2,310,991 - 2,311,947 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 14 | 2,251,859 - 2,252,815 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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LOC100623502
(Sus scrofa - pig) |
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Expression
RNA-SEQ Expression
Sequence
| RefSeq Acc Id: |
XM_007990185 ⟹ XP_007988376 |
| Type: |
CODING |
| Position: |
| Green Monkey Assembly | Chr | Position (strand) | Source |
|---|
ChlSab1.1 | 25 | 85,325,169 - 85,330,931 (+) | NCBI | Vero_WHO_p1.0 | NW_023666055 | 88,114,469 - 88,115,290 (-) | NCBI |
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| Sequence: |
CAGAGGGCAAGGAAGGAAACTGCATGAAGCAGCTTTAATCTAAGCTATCGCAGAGCTTCCTAAC
AACAGGCTGCTGCATTGAAGGAGCATGGAGCATGCTCTTTTCTTTGACAAAATCTTCACCAGTG
GTCACATGGAAGCAGGCAAAGGCTGCAACTTACAACTTAGGGATTATCTTGTCACTTGATTTAA
AGGATGGGCTGGGTGATCATTACAGTCCTGGGCAAGCATTGTGTCCTATGCTCCAATTGTAGTG
ATGTGGGAGGAAAATATTTGCAGCCATCCCTACCACCACCATGTACCCCTTATAAAATAGTAGA
GAATATTTACAAATGTCAGGATAACATAAATGTGTTGATTTATCTCTTGGTGTATGGTATTATG
CAATAAAAAATAGTGTAAGTAAGCCTAAAATAAAATTTTATCCAATAAAATTATGTCTATTTTA
TCCATTAACATTTTTTTTCTAATTTTCTCAAAATTTGCAGGCCAAGCATACTCCTGCTCTTCAA
AGGAGTTTAGAGTTTCTGCAAGCTTAATTACGATGCACACCTTTTTCTGAGAATTTCTACTAAG
TAACATTTCTTTCAAGTCAAAGGATATCTGGGGGAAAAGATAGACTTTAACTGCTGATGTAACT
TCACTGGGAGCGCCTGGGTTTACAGACCTTTTGTGAAGATCAGGAGATATTACCTGATATCAGC
ACAATTGTAGGATCAATGGAAGAGCACAACACATCCTCTACAGACTTCGCTTTCATGGGGCTGT
TGGACAGAAAGGAAACCTCAGGTCTTCTTTTTGCCATCATCTCTATCATCTTCGTCACCGCACT
GACGGCCAATGGGGTTATGATCTTCCTGATCCAAACAGATTTGCGCCTTCATACACCCATGTAC
TTCCTCCTCAGCCACCTTTCCTTAATTGACATGATGTACATTTCCACCATTGTGCCTAAGATGC
TTTTTGATTACGTGCTGGATCAAAGGACCATTTCCTTTGTGGGGTGCACAGCTCAACACTTCCT
CTACCTTACCCTTGTGGGAGCTGAATTCTTCCTGTTGGGCCTCATGGCCTATGACCGCTATGTG
GCCATGTGCAACCCTCTGAGATACCCTGTCCTCATGAGCCGCCGAGTCTGTTGGATGATTATAG
CAGGTTCCTGGTTTGGGGGCTCTTTGGATGGCTTCCTCCTAACCCCCATCACCATGAGCTTTCC
CTTCTGCAATTCCCGGGAGATCAACCACTTCTTCTGTGAGGCTCCGGCAGTCCTGAAGTTGGCT
TGTGCAGACACAGCCCTCTAGGAGACAGTGATGTACGTGTGCTGTGTTTTGATGCTGCTGATTC
CTTTCTCTGTAGTCCTTGCTTCCTATGCCCGAATCCTGACCACAGTGCACCGCATGAGCTCAGT
GGAGGGCAGGAAGAAGGCCTTTGCCACTTGTTCATCCCACGTGACTGTGGTGTCCTTGTTCTAT
GGGGCTGCCATGTACACCTACATGCTACCACACTCCTACCACACGCCTGCCCAGGACAAAGTCC
TCTCTGTGTTTTACACCATTCTCACACCCATGCTGAACCCCCTCATCTACAGCCTTAGAAACAA
GGATGTGACTGGAGCTCTGAAGAGGGCCTTGGGGAGGTTCAAGGGTCCTCAAAGGGTGTCAAGA
GATGTTGCTTCATTGTCTTTTGGAATCTACTAA
hide sequence
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| RefSeq Acc Id: |
XP_007988376 ⟸ XM_007990185 |
Additional Information
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