LOC102021128 (olfactory receptor 2T1)

Gene: LOC102021128 (olfactory receptor 2T1) Chinchilla lanigera

Analyze

Symbol:

LOC102021128 (Ensembl: OR2T1)

Name:

olfactory receptor 2T1

RGD ID:

8817467

Description:

ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	30,198,087 - 30,199,043 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	30,198,087 - 30,199,058 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 54 (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

parathyroid carcinoma (ISO)

prostate cancer (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC102021128
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	30,198,087 - 30,199,043 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	30,198,087 - 30,199,058 (-)	NCBI	ChiLan1.0	ChiLan1.0

OR2T1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	248,403,048 - 248,408,020 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	248,403,048 - 248,408,020 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	248,566,349 - 248,571,321 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	246,635,919 - 246,637,028 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	244,895,336 - 244,896,446	NCBI
Celera	1	221,855,733 - 221,856,842 (+)	NCBI		Celera
Cytogenetic Map	1	q44	NCBI
HuRef	1	218,956,300 - 218,957,409 (+)	NCBI		HuRef
CHM1_1	1	249,841,494 - 249,842,603 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	247,828,076 - 247,833,646 (+)	NCBI		T2T-CHM13v2.0

Or2t1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	8,140,697 - 8,141,650 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	8,137,972 - 8,146,935 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	14,328,113 - 14,329,066 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	14,322,828 - 14,331,791 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	15,160,627 - 15,161,580 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	13,121,380 - 13,122,333 (+)	NCBI		MGSCv36	mm8
Celera	14	10,004,247 - 10,005,200 (+)	NCBI		Celera
Cytogenetic Map	14	A1	NCBI
cM Map	14	7.08	NCBI

Or2t1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	13,391,080 - 13,392,033 (-)	NCBI		GRCr8
mRatBN7.2	15	10,960,562 - 10,961,515 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	10,954,685 - 10,966,743 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	13,087,941 - 13,088,894 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	14,019,713 - 14,020,666 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	12,301,220 - 12,302,173 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	12,261,122 - 12,262,075 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	12,261,028 - 12,262,164 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	16,294,146 - 16,295,099 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	12,472,119 - 12,473,072 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	12,472,118 - 12,473,072 (-)	NCBI
Celera	15	10,968,306 - 10,969,259 (-)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

LOC100972936
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	579,291 - 585,402 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	855,639 - 861,338 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	224,108,483 - 224,109,592 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	229,552,860 - 229,553,969 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	229,552,860 - 229,553,969 (+)	Ensembl	panpan1.1		panPan2

OR2T1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	2,613,861 - 2,614,946 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	2,613,990 - 2,614,946 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	2,264,145 - 2,265,101 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	2,346,746 - 2,347,702 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	2,346,746 - 2,347,702 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	2,510,348 - 2,511,304 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	2,310,991 - 2,311,947 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	2,251,859 - 2,252,815 (-)	NCBI		UU_Cfam_GSD_1.0

LOC100623502
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	54,339,010 - 54,340,093 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	161,489,632 - 161,502,693 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103231065
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	85,325,169 - 85,330,931 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666055	88,114,469 - 88,115,290 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005382335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01019506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000025813 ⟹ ENSCLAP00000025548

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955418	30,198,087 - 30,199,043 (-)	Ensembl

RefSeq Acc Id:

XM_005382335 ⟹ XP_005382392

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955418	30,198,087 - 30,199,058 (-)	NCBI

Sequence:

show sequence

GCCCCCGTAGGGTCAATGGAAGGGTACAACACATCCTCTACAGACTTCACCTTCCTGGGGCTGT
TCACCGGACAGGAAACCTCAGGTCTCCTCTTTGTCACCATCTCCATCATCTTCCTCACTGCACT
GATGGCCAACGGGATGATGATCTTTCTGATCCACACTGATTTACACCTCCACACCCCCATGTAC
TTCCTCCTCAGCCACCTTTCCTTAATCGACATGCTGTATATCTCCACCATTGTGCCAAAGATGT
TGGTGGACTATCTGCTGGGCCAGAGAACCATTTCTTTCATGGGGTGCACAGCGCAGCACTTCCT
CTACCTCACCCTCGTGGGGGCCGAGTTCTTCCTGCTGGGTCTCATGGCCTACGACCGCTATGTG
GCCATCTGCCACCCCCTGAGATACCCTGTCCTCATGAGCCGCCGCGTGTGTTGGATGATCATCG
CAGGCTCCTGGTTTGGGGGCTCTCTGGATGGCTTCCTCCTCACACCCATCACCATGAGCTTTCC
CTTCTGTAGCTCCCGGGAAATTCATCATTTCTTCTGCGAGGCACCTGCTGTGCTGAGCTTGGCC
TGCGCAGACATAGCCCTGTATGAGACAGTGATGTACGTGTGCTGCGTGTTGATGCTGCTCATCC
CCTTCTCTGTGGTGATTGCTTCGTATGCCCGAATCCTGACCACTGTCCACCACATGAGCTCTCT
GGAGGGGAGGAAGAAGGCATTTGCCACCTGCTCATCCCACATGCTCGTGGTGACCCTCTTCTAC
GGGGCTGCCATGTACACCTACATGCTGCCACACTCTTACCACACGCCGTCCCAGGACAAGGTCT
TCTCTGTGTTCTACACCATCCTCACGCCCATGCTGAACCCACTCATCTACAGTCTGAGGAACAA
GGATGTAGCTGGGGCGCTGAGGAGGGCCCTGGGGAGGCTCAGGTCTTCCCAGAGAGTGTCTGGA
GAGGCTTTCTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005382392	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000025548
	ENSCLAP00000025548.1

RefSeq Acc Id:

XP_005382392 ⟸ XM_005382335

- UniProtKB:

A0A8C2WAN5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEGYNTSSTDFTFLGLFTGQETSGLLFVTISIIFLTALMANGMMIFLIHTDLHLHTPMYFLLSH
LSLIDMLYISTIVPKMLVDYLLGQRTISFMGCTAQHFLYLTLVGAEFFLLGLMAYDRYVAICHP
LRYPVLMSRRVCWMIIAGSWFGGSLDGFLLTPITMSFPFCSSREIHHFFCEAPAVLSLACADIA
LYETVMYVCCVLMLLIPFSVVIASYARILTTVHHMSSLEGRKKAFATCSSHMLVVTLFYGAAMY
TYMLPHSYHTPSQDKVFSVFYTILTPMLNPLIYSLRNKDVAGALRRALGRLRSSQRVSGEAF

hide sequence

RefSeq Acc Id:

ENSCLAP00000025548 ⟸ ENSCLAT00000025813

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000017639	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000025813	ENTREZGENE
	ENSCLAT00000025813.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
NCBI Gene	LOC102021128	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 2T1	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A8C2WAN5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	LOC102021128	olfactory receptor 2T1		olfactory receptor 2T1-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar